AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi22g00288 ATGATTAGATTGGTCTTTGCAGGTGATGCTTTAAATAACTGTGAGGCCTTCTTTAGACCTGCCAGTTTGTCTGAATACAATGCTGAATCTCATGCCCTGGAAGCTAGAAGCAGGAGTCCAAATTCCGATGAACCCAAATGTGGTTCACCAACTGTCATTAGTTGCAGTGAGCTTTCTCAAAGTGAAAAAGAAAACCGAGAGGGAGGCAATGCCCCAGCTTTTAATGACGTAGATGGGATAGCGAATAAAGTTGAATCTATTTCTCATGATCCCAAAGGAAATGACGTCTCCGAAGACGACAGGAGCTTCACTTTTGAGGTCAGCTCACTGGCAGATCTATCTGATAGAGAAACTGGCAAGGGTTGGAAACCATTTCCCATTATTCAACCTTATGAACTTCCTCAGACTGTAGAGGATTCTCCTTCAACAACATCTCGTGGAATTCCTCGAGTTTCTGATGGTGAGAATGTACGCAGCAGTTCAAAAAGTACTCCTGAGCGTAAAAAAACAAGGCGAGTGTCTGTTAAGGCAACCGAGAGGGAAACTGCTAAAGCAGGGAAGCCTATTAAAGAAATAAATTCTGTACGACAGACAACAGAAAGAGGGGCGAAGTCATGCAATGTATCCCCCAACTCAATTGGGACTACAACTCAGGTTCTGCAAGCCGAAAAGATGGGGTCCTATGAGTATGTTGAAGGCAGTAGTATGAAACCATGTGTTGTTCCCACTATTCAGACATCTAATCTTCCGGATCTGAATACCTCAGCTTCTCCATCTGCACTGTTTCAACAGCCTTTCACGGACTTACAACAAGTGCAACTGCGTGCTCAGATCTTTGTTTATGGATCTTTGATCCAAGGGACTGCACCCGATGAGGCATGTATGATATCAGCCTTTGGAGAATCTGAACACATAGATGCAGGAAGGAGCGCATGGGAGAATGTGTGGCGTGTTACTGTAGAAAAGCTTCACAATCAGAAATCCCCCCTCAGCATTCTTGAGACTCCTCCACACTTACGATCAGGTTCCAGGGTTGCTGAACAAACAATTAGACAAAGTTCTCTTCAGAGTAAAGCTCTTCCAACACCTGTTGATCGCACTGGCAGCAAGGGTACCCCTTCAGCAATTATAAATCCCGTGATACCCCTCTCCTCACCACTATGGAATATTTCTACCCCGCATGATGGGTTGCAGTTCAGCAGTATACCAAGGGGCCTACTACTTGATTCTCATCAGGCACTTTCTCCATTGCATCCTTATCAGTCTCCGCACATAAGGAATTACATAGGACATAACACTCATTGGCTATCTCAGCCCCCTTGTCCGGGACCCTGGGTTGTTTCTCCACAAACTTCTGCAGTTGATACCGGTGCTCATTACTCTGCATTACCCATTACTGAAGCAGTTCATGTAACATCTGTTCGAGAGTCATCTGTACCACGTCCGTCTAGTATACAGCATGTACCTCCTAGTCCCTTGGTTCATAACGGTGGGGGTTCTATGAGTGTTTTTGCAGGGACTGCTCCTCTGCTGGATGCGAAAAAGGCAACAGTATCAACTGGCAAGCATGCTTCTGCTGATCCGAAGCCTAGAAAGAGGAGAAAGAATCCAGCTTCTGAGGAGCTTAGCCAGATCTGTTCGCTTGATCAAACTTATACAGAACCAGTTTCTGGTGCTGGTGTTACCAGTAACCTGTCTGCATCTCGTGCCATCATAACCCCTGCTAATTCTGCATCTAAAACCACTCCTGGAAATTTTATTGCTGCTGTTTCTACAATATCTTCCACACAATACCAGTTAGTAGGGGGCCGGGATACAGAACAGAAGGCTATATATCTGGAGGAGACATGCAGTAAAATCGAGCAGGCTAAGCTGCAGGCAGAGGATGCTGCTGCTCTTGCTGCCGCTGCAGTCAGGCATAGCCAAGGCATATGGAGTCAATTGGATAAACAGAAGGATTCCGGATTGGTTTCAGATGTTGAAGCTAAACTAGCTTCTGCAGCTGTTGCAGTAGCAGCAGCTGCTTCCGTTGCAAAGGCGGCTGCAGCGGCTGCTAAGGTTGCATCCGATGCTGCATTGCAAGCTAAACTGATGGCTGATGAAGCCTTGGTTTTAAGTAGAACTGGGAATCCCACCCAAAGTACTGAAACTTGTGTCTCTGATAGTGTGACTAATTTGGGAAAGCTTACTCCTGCATTGATCTTGACTGGCAAGGACAGAACCAACAGTTCCAGTTCGATTATTGTTGCTGCAAGGGAGGTTGCTAGGAGGAGGGTTGAAGCTGCTTCAGCTGCCACAAAACGAGCAGAGAATTTGGATGCGATAGTAAAAGCTGCAGGGCTAGCAGCAGAAGCTGTATCGCAAGCAGGAACTATTATTGCGATGGGTGATCCGATACCTTTGAGTGTTAGTGAGTTAATTGAAGCTGGTCCAGAGGGCTATTGGAAAGTACAAGAAGTCTCTTCTGAGCAGCTTGTTAAATCCAACAATATAAATAGAGGAGAACAATCCAACATGGATGGTGTGGAAGGTCTTGATGCATCTCCTAAACATTTAAATGACCGGTCATCAAATAAGAAAGAAACACAGACTATATACCAAGGGAAGCCATCACCTCCAAAAGAGATGTCCAGGCAGTCGGTGGAGAACCACATGGGGTTGGTAAATGGTATGCAGTGGGATTCTGCAAAAAGTATTGAAAAGGGGTTGGCAGGACAGAAAGGCCGTAAAGCATCTGAATTAGCTAAAACCATTGGGGTTGTTCCTGAATCCGAGACTGGATCAAGATCTGCTTCCATTACTGTCCAGAATGAGGAGTATAAAGGACACCAGCCAGTGGGGACTTCAAACGAGAATAGCATTAGAGAGGGTTCCCATGTAGAGGTTCTCTCCGACAAGGACGATCTTAGAAGGGTCTGGTTCTCAGCCAAGGTGCTGAGTTTGAAGGATGGAAAAGCAAATGTCTGCTACACAGACGAAGGCTCTAGGCAGCTAAAGGAGTGGGTGTCACTTGAAGGTGAAGGAGATAAGGAACCCAAGATACGCATTGCGCGTCCTATGACTGCCATGAAATTTGAAGGAACGAGGAAGAGACGCAGGGAGGCCATGGGAAATTATGCTTCATCTGTTGGAGAGAGGGTGGATGCAAGGATTCGTGATGGGGGAGTAGCTGATGAGAGGATAGGTGTGGTTGACGGAACAAGTGGCGATGTTTTGGGCTCTGTGCTAGTTCGAGGACAGGATGTAGGTGCCTGGAGTAGTAGGCAGTCAAGTGGTAAGTCTTTTGAGTTCAACCTCCTCCAGCATCAAATGAGAAGAATGGAGAGAAGGTATGGATTTCGAGGCCTCATGGAGTATGATTTTCAGGATTCCTTGTCGGTGTCTTCATCGCAGTCAGAGATGGTGAAGATCAGTTGGTGGGAAGGAATTATCACTGAGAAGAGCAAGGAAGATGAAACAACATTGACTGTTCATTTTCCAGCTCAAGGAGTTACATCAATTGTTAGTGCTTGGCATCTTCGGCCATCTTTCATTTGGAAGGATGGGCAGTGGATGGAATGGTCCAGTCCAAGGGAAAATATCTCCTGTCCCCATGAGGACGACACTCGGCAGGAAAAGCGATTAAAGGTCGTCAGTCATGAAGCTGAAATCAATCCTGCAGTTGAAACCAGAAGGAAGGATAATTTATCAAAAAATATTGGCATTGAGGAATCAGACAAACCTGAAGAGTTCAGGTCACTGGCATTATCTGCGAAGGAAAAAATATTCAATGTTGGGACAAGCATCAGAGAGGAGAATAAGCCTGACACTCTCAGAATGAGGCGGACTGGTTTGCAGAAAGAAGGATCAAGAGTGATTTTTGGTGTTCCTAAGCCAGGAAAGAAACGAAAGTTTATGGAAGTAAGCAAACATTATGTTGCTGATAGAAGTGATAAGATAAATGAAGGAAAGGATTCAACTAAATTTTCTAAGTTCTTGATACCTCAAGGACCGGGGACCCGTGGATGGAAAAATACTTTTAAAATTGATTCCAAAGAAAAAGGAACAGCTGAATCTAAGCCCAAGGTGCCTAAGTCTGTAAAAACACGAAGCGTTCCGAGTAGAAGTATACCTCAGAAGGATAGCTCTTTAACATGTGTTATCCCTGCCTCTAATGATGGCACTGTGCAAGATCATTTACCGAATGTTGGGGCCTCTGTTGGTCTCTATGAAATCATATCAGAAAAGCAGCCCTTGATAGAAGTTGGTTCTTTTCCTAAAACTCGTAAAACGGCTGATGGCCCATTGTTATTTTCTTCTCTTGCTCTTCCGTCAGATGCTCCCAGGAAACAGTCCTCATCACCTGTCGAAGCTGAACGGGTAAATAGAGGTAAGCTTGCACCTTCTGGGGAAAAATTGGCTAGAATTGAAGAAAAGGATTCAAGTCAGAATGATCATCCTGGAAAATCAATCCTTGATGTTGTTGAGCCTCGGAGATCTAATCGCAGAATGCAGCCAACATCAAGGGTAAATCCTTCAGAATTCCTTAGATTTGTTTTCCTTTTTAGCATCATGTTCTTACTGAGATTTATTAGAGCTCAAATGGCAGAGCAAACCGGAAAATTGCTTCAACTCTCCCTGCAAGAAAACAACAAGGTTATTGAGTTAGATGGTGACCCTCTCCAGGCCGATCTCTCAAAGTTTGTCAACAGCTTGGTGGGGTGCCTTCTCTCGGATAGGCCCTATAGCCTGGCGGCTGCAAAGAGCACCATCATCCACTCATGGAAACCCCAAGAGGACGTGCAGGTAGTGGAACTTCTTGCGAATCTATTGTTGTTCAAATTCCAGAAGAGGGAAGATCTGCTCAAAGTTAAACGTTTTGAACCCTGGGTGTTTAATAATCATCTTCTTCTGTTGAGAGATTGGGTACCAGATCTTTCCCCTCATGAAATCATCTTCGACGACACTCTTTTTTGGATTCAATTGCATGGCCTACCCTCAGAAAGGCACACTCACCAAGTGGGGTTGGATCTCGGCAGCGAAATTGGTATAGTTTTAGAGGTGGATGTCCACACTGGGGATGGTTCTAAAGGAAAGTTCATTCGCATTCGAGTTATCGTTGCAATGAGTCTCCTAATACGACACCAGATGTTGAGCTTTCTGATGCCCTTGCTAATCAAAGTCTGCTATGAGCGCCTCCCATCTTTTTGTTATCATTGTGGCATCCTCGGCCATGAATTCAAGTATTGTGCTACTCAGTCGGAGGAACTCCCCACATATATTGATCACCCTGTTGACCCTTGGTTACGGGCGGACTACTTTAGGCCACGATAA 5313 45.17 MIRLVFAGDALNNCEAFFRPASLSEYNAESHALEARSRSPNSDEPKCGSPTVISCSELSQSEKENREGGNAPAFNDVDGIANKVESISHDPKGNDVSEDDRSFTFEVSSLADLSDRETGKGWKPFPIIQPYELPQTVEDSPSTTSRGIPRVSDGENVRSSSKSTPERKKTRRVSVKATERETAKAGKPIKEINSVRQTTERGAKSCNVSPNSIGTTTQVLQAEKMGSYEYVEGSSMKPCVVPTIQTSNLPDLNTSASPSALFQQPFTDLQQVQLRAQIFVYGSLIQGTAPDEACMISAFGESEHIDAGRSAWENVWRVTVEKLHNQKSPLSILETPPHLRSGSRVAEQTIRQSSLQSKALPTPVDRTGSKGTPSAIINPVIPLSSPLWNISTPHDGLQFSSIPRGLLLDSHQALSPLHPYQSPHIRNYIGHNTHWLSQPPCPGPWVVSPQTSAVDTGAHYSALPITEAVHVTSVRESSVPRPSSIQHVPPSPLVHNGGGSMSVFAGTAPLLDAKKATVSTGKHASADPKPRKRRKNPASEELSQICSLDQTYTEPVSGAGVTSNLSASRAIITPANSASKTTPGNFIAAVSTISSTQYQLVGGRDTEQKAIYLEETCSKIEQAKLQAEDAAALAAAAVRHSQGIWSQLDKQKDSGLVSDVEAKLASAAVAVAAAASVAKAAAAAAKVASDAALQAKLMADEALVLSRTGNPTQSTETCVSDSVTNLGKLTPALILTGKDRTNSSSSIIVAAREVARRRVEAASAATKRAENLDAIVKAAGLAAEAVSQAGTIIAMGDPIPLSVSELIEAGPEGYWKVQEVSSEQLVKSNNINRGEQSNMDGVEGLDASPKHLNDRSSNKKETQTIYQGKPSPPKEMSRQSVENHMGLVNGMQWDSAKSIEKGLAGQKGRKASELAKTIGVVPESETGSRSASITVQNEEYKGHQPVGTSNENSIREGSHVEVLSDKDDLRRVWFSAKVLSLKDGKANVCYTDEGSRQLKEWVSLEGEGDKEPKIRIARPMTAMKFEGTRKRRREAMGNYASSVGERVDARIRDGGVADERIGVVDGTSGDVLGSVLVRGQDVGAWSSRQSSGKSFEFNLLQHQMRRMERRYGFRGLMEYDFQDSLSVSSSQSEMVKISWWEGIITEKSKEDETTLTVHFPAQGVTSIVSAWHLRPSFIWKDGQWMEWSSPRENISCPHEDDTRQEKRLKVVSHEAEINPAVETRRKDNLSKNIGIEESDKPEEFRSLALSAKEKIFNVGTSIREENKPDTLRMRRTGLQKEGSRVIFGVPKPGKKRKFMEVSKHYVADRSDKINEGKDSTKFSKFLIPQGPGTRGWKNTFKIDSKEKGTAESKPKVPKSVKTRSVPSRSIPQKDSSLTCVIPASNDGTVQDHLPNVGASVGLYEIISEKQPLIEVGSFPKTRKTADGPLLFSSLALPSDAPRKQSSSPVEAERVNRGKLAPSGEKLARIEEKDSSQNDHPGKSILDVVEPRRSNRRMQPTSRVNPSEFLRFVFLFSIMFLLRFIRAQMAEQTGKLLQLSLQENNKVIELDGDPLQADLSKFVNSLVGCLLSDRPYSLAAAKSTIIHSWKPQEDVQVVELLANLLLFKFQKREDLLKVKRFEPWVFNNHLLLLRDWVPDLSPHEIIFDDTLFWIQLHGLPSERHTHQVGLDLGSEIGIVLEVDVHTGDGSKGKFIRIRVIVAMSLLIRHQMLSFLMPLLIKVCYERLPSFCYHCGILGHEFKYCATQSEELPTYIDHPVDPWLRADYFRPR 1770
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi22g00288 1770 MobiDBLite consensus disorder prediction 1433 1500 - -
Tesi22g00288 1770 Coils Coil 613 633 - -
Tesi22g00288 1770 SMART agenet-At-2 952 1012 IPR014002 -
Tesi22g00288 1770 SMART agenet-At-2 1117 1181 IPR014002 -
Tesi22g00288 1770 Pfam Zinc knuckle 1719 1744 IPR025836 -
Tesi22g00288 1770 MobiDBLite consensus disorder prediction 1344 1373 - -
Tesi22g00288 1770 Pfam Domain of unknown function (DUF4283) 1577 1698 IPR025558 -
Tesi22g00288 1770 PANTHER AGENET DOMAIN-CONTAINING PROTEIN 1135 1502 - -
Tesi22g00288 1770 MobiDBLite consensus disorder prediction 859 879 - -
Tesi22g00288 1770 MobiDBLite consensus disorder prediction 829 879 - -
Tesi22g00288 1770 MobiDBLite consensus disorder prediction 351 374 - -
Tesi22g00288 1770 MobiDBLite consensus disorder prediction 160 185 - -
Tesi22g00288 1770 MobiDBLite consensus disorder prediction 135 159 - -
Tesi22g00288 1770 MobiDBLite consensus disorder prediction 1344 1358 - -
Tesi22g00288 1770 MobiDBLite consensus disorder prediction 516 542 - -
Tesi22g00288 1770 MobiDBLite consensus disorder prediction 42 59 - -
Tesi22g00288 1770 MobiDBLite consensus disorder prediction 34 76 - -
Tesi22g00288 1770 MobiDBLite consensus disorder prediction 474 496 - -
Tesi22g00288 1770 MobiDBLite consensus disorder prediction 133 185 - -
Tesi22g00288 1770 MobiDBLite consensus disorder prediction 351 375 - -
Tesi22g00288 1770 Pfam Agenet domain 957 1015 IPR008395 -
Tesi22g00288 1770 MobiDBLite consensus disorder prediction 1457 1496 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi22g00288 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr22:21056492 Tesi4g00640 Tesi-Chr4:30488153 dispersed
Tesi Tesi-Chr1:7531889 Tesi22g00288 Tesi-Chr22:21056492 wgd
Tesi Tesi-Chr21:13511169 Tesi22g00288 Tesi-Chr22:21056492 wgd