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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi22g00298 ATGGGTTCATCTTCAGCTCCAATTTCTCCTAGAAAGCTTAGATCTGATCTGTATTCCTTCTCATACCAAGATGATGCAAATACCCCATTAGTGATTTCTGTTCTTGCTTCTCTGCTTGAGAGAACTATAGTGAGGAATGAAAGGATTGCAAGAAAATGTACATGGGCCTTGTCGAAGAACACGAGAACTTGTGTTTTTGATTGTTATCAGATGCCGGACTTGACAATTCAGTCTTTTCTTGAGAGAATTTTCCGATACACTCGCGCCGGACCGCCAGTGTATGTCGTTGCATATGTTTATATTGATCGGTTATGTCAGATCAACCCGAGCTTCCGAATCACCTCCGACAATGTACATATGCTTCTCATTACTACCATTATGGTGGCCTCTAAGTTTGTTGAGGATATGAATTATAGGAATTCTTACTTTGCAAAGGTCGGAGGATTAACGACGAAGGAAATGAACAATTTAGAGCTTGAATTTCTGTTCTTGATGGGTTTCAAATTGCACGTTAATGTAAGCGTGTTCGAGAGCTACTGTTGCCATCTAGAGAGGGAAGTAAGCATCGGAGGCGGGTATCAAATCGAGAGGACTCTACGGTCTATGTGCGCCAGAGAAATCAAATCCAAGCAAAATGAGGAAAGGGATTTTAATTACTCATGTAGTTCAAATTAA 675 40.74 MGSSSAPISPRKLRSDLYSFSYQDDANTPLVISVLASLLERTIVRNERIARKCTWALSKNTRTCVFDCYQMPDLTIQSFLERIFRYTRAGPPVYVVAYVYIDRLCQINPSFRITSDNVHMLLITTIMVASKFVEDMNYRNSYFAKVGGLTTKEMNNLELEFLFLMGFKLHVNVSVFESYCCHLEREVSIGGGYQIERTLRSMCAREIKSKQNEERDFNYSCSSN 224
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi22g00298 224 Gene3D - 21 223 - -
Tesi22g00298 224 PIRSF PREG 6 223 IPR012389 -
Tesi22g00298 224 SUPERFAMILY Cyclin-like 78 170 IPR036915 -
Tesi22g00298 224 Pfam Cyclin 31 169 IPR013922 GO:0000079(InterPro)|GO:0019901(InterPro)
Tesi22g00298 224 PANTHER UNCHARACTERIZED 22 213 IPR013922 GO:0000079(InterPro)|GO:0019901(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi22g00298 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr1:8368901 Tesi22g00298 Tesi-Chr22:21349327 dispersed
Tesi Tesi-Chr22:21349327 Tesi3g00953 Tesi-Chr3:55256558 dispersed
Tesi Tesi-Chr22:21349327 Tesi8g00492 Tesi-Chr8:9126125 transposed