AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi22g00305 ATGGCTTCTCCTCCATTTCAGGTGGAGGATCAAACGGATGAGGATTTTTTTGACAAGCTGGTCGATGATGAGTTCACGGGTCCTGGTTTTGGAGAAGGTGATGACTCTAATGAAGTAAAAGCATTTTCAAACCTGAGCATTGGCAAGCTCGGTACTCTCTCTGAGGATTCTGGCTGCAAAGGAGGGATTGCGGCGCGAGGGAATATCTTGGTTGCAGAGGAGAGCATTTCCCTTGTATCCTCAAATTCATTTGGATTTGATGAAGTGATTGAATCCAGTGATGCTGCAATGGGGGTCGATGTTGCATTGGAATCCACAACAAGCAAGAACAGTGGATCCACGGGTACGGATGTTAAAGAGGTGCAATGGAGTTCATTCAATATTGACTCTTCTCAGCATCATGGATTTGGGTCCTACTCCGATTTGCTTACCAATTTGGGAGATAGTTCACTTGATCCAATTGGGAATGCAGGGGACAATTCAAAGGTTGAATCCAACAATGTATATGGCATTGCAGAAAACAAGGTTTCTGATATGACATCTTTTAATCATGTGCAACATCAAGAGGATCAAGCCTACGGTGCGGCCACAGAACAGACTACAGATGGACAGGATTTGTATAGCAGTGAATATTGGGAAAACCTTTATCCGGGGTGGAGGTATGACCCAAATACTGGAGAGTGGCATCAGTTGGATGGTGGGGATGCAACAGCAAATATCCAAGGGAGTTTTGTTGCCAATTCTCTATCAGCAGGTGTTGATGTCGTTTCCGATCAGATATCTGAGATTTCTTATTTGCAGCAAACGCCTGAGTCTGTTGTGGGAACTATAGCTGAGGGTTGTACAACTGGTAATGTCTCTAACTGGAATCAGGTCTCACAAGGGAGCACCGAGTACCCTGCGAATATGAAATTTGATCCTCAGTACCCTGGTTGGTACTATGACATGATCGCCCAAGAGTGGCGCTCATTGGATTCTTACACTCAGGCTGTTGAATCAACAAGTACAGGTCATGAACAGCACAATCAAAATGAGAATGCTTCAACGAGTGGTTTCTTCCCTGACAAAGATCATAACCTATATGGTGAATATGGGCAAGTTGAAACTTTTGGATCTCAAGGCTTGGAGAATCAACACCAAGGTGGGAAGTGGACTGGATCTGCTAGTAACTACAATCAGCAGGATATGAATAGATGGCAACCTGAGACAGTTGTTAGGAGTGATGTCATTACTGGATTTACTGGAAACCAGCAACCAAAGAACCTATATGGTTCAAGGGGTTCTGTAAACTATTACGCAGACAAACAAATGGGTTTTGATCTCATTGGAACAGTTACTTTATCTGAGCAGACAAGACATAATCATGATGGCAGTAATGAGGCATTTGGGTTTCAAAGCTTTGCTCCTTCTGAGAATTTATGTCAGCCACTTAATCAGCCAAATATGGAGCAGAGCCAAGAGATGCATTTCTCTCAAGATTATTATGGCAGTCAGAAATCAGAAATTTTTTCACAGCATCCGTTTCAGAGTGGCACTCAGTTCTCTTATGCTCCCAATGGAGGAAGGTCATCCTCAGGACGACCTCCACATGCTCTGGTTAATTTTGGGTTTGGTGGAAAACTCATAGTCATGAAAGATAGTAGTTCTCTTGTTACAAACTCAGCATATGGAAGCCAGGACTCTGTAGGAAGTTCGATTTCTATTCTCAACTTGATGCAAGTTTTCATGGACAAAACTGATACTGCAAGCACTGGGATTGGTGCTTGTGATTACTTCTGTACTTTGTGCAATCATTCCTTTCCTGGTCCGCTGGTTGGTGGGAATGTCGGAAGTAAAGAGTTGAATAAATGGATTGATGAGAGGATTTCAAACTGTGAATCACCCAACATGGACTACAGAAGAGGCGGATCGCTGAGGTTGCTCCTTTCTTTGCTTAAAATAGCGTTTCAACATTATGGAAAACTTCGATCTCCTTTTGGCATTGATCCAATATTAAAGGAAAGTGACTGTCCAGAATCAGCGGTAGCCAAGCTTTTTGCATATGCAAAAAGGAATGGTGTGCAATTAAGCGAATATGGTGCCCCTATTAACTGCTTGCAGCATTTGCCTTCTGAAGAACAGATTCGCGCAACTGCTGTTGAGGTACAGAATCTTCTTGTTTCTGGTAGAAATAAAATGGCTCTACAATGTGCACAAGAAGGTCAGTTATGGGGTCCGGCACTTGTTCTTGCTGCACAACTTGGTGATCAGTTTTATGTTGATACTGTGAAGCAAATGGCACATTGCCAGTTAGTAGCAGGATCACCTTTGCGGACATTATGCCTACTAATTGCAGGACAATCAGCAGATGTGTTTTTCTCTGACACCACAACTAGTACTGGCTTGCCTGGTGCTGTTAATTTATCTCAACAGCCTGCACAGATTAGGGCTAATGGTATGCTAGATGATTGGGAAGAGAATTTGGGCATCATAACTGCAAATAGAACAAAAGATGATGAGCTTGTAATTATTCATCTCGGAGATTGCCTATGGAAGGAGAGAGACGAGGTTGCTGCTGCGCACACCTGTTATTTAGTTGCAGAGGCAAACATCGAGTCATATTCAGACAGTGCAAGACTGTGTCTTATTGGTGCAGATCACTGGAAATCCCCCCGAACATATGCTAGTCCTGAGGCTATTCAGTTGTTGCAATTTTTTATGTTTGGATATGCAAAAGAGACATGTTTAAATGGATGGAAAAATATAACTAAACTGGCCTACCTAATATCTGGACAGAGGACAGAATTATATGAATATTCGAAGGTGCTTGGAAATTCGCAGTTTATCCTACTACCCTTTCAGCCATATAAGCTTATATATGCCCACATGCTTGCTGAAGTGGGAAAAGTTTCAGATTCGTTGAAGTACTGTCAGGCAATATTAAAATCTATGAAAACGGGTCGAGCACCCGAAGTAGACACGTGGAGACAATTAGTATCATCTCTCGAGGAGCGCATAAAAACCCACCAGCAGGGTGGATACAGCACAAACTTGGCTCCCACAAAACTGGTGGGTAAATTGCTCACCTTCATTGACTCTTCAACTCATCGCTTGATTGGGACACATCCACCACCTGTGCCGTCAACATCACAGAACAGCGTTCATAGTAATGAACACAATCATCACCCCATGGGCCTAAGAGTAGCAAGCAGTCAGTCAACAATGGCCATGTCATCGTTAATTCCTTCATCATCAATGGAGCCCATAAATGAATGGATGGCTGATAGCAATAGAATGACTCTGGCAAATAGAAGTATTTCAGAGCCAAACTTTGGTAGAATGCCTAGACAGGTCAATCAATCTAAAGAAGCAGCTTCATACAACGCACAAGGCAAAGCTTCGGTCTATGGTGGGTCATCTCGCTTTGGCCGTTTCAGCTCACAGCTCTTCCAAAAGACCATGGGGCTGGTCTTGAAATCTCGCCCAGACCGACAGGCTAAACTGGGTGAAAAGAATAAATTTTATTACGATGAAAAGCTCAAGCGATGGGTAGAGGAAGGCATCGAATCACAAGCTGAAGAGGCAGCCCCACCACCCCCGCCAACAACTTCAGCCTTCCAGAACGGAACGCTGGATTACAACATTAACAATGCATTCAAAAGTGAAAGCTTGCCTCCTAATGAGGGGCATGAAATCAGAAGCCCAGCTCTTCCGGAGCGTAGTTCTGGGATCCCACCCATCCCACCCAGCTCAAACCAATTCTCAGCTCGTGGACGGATGAGTGTTGGATCAAGATATGTTGACACCTTCAACAAAGGTGGTGTGACCCCATCAAACTTATTCCAGTCACCTTCTGCTCCATCTGCAAAACCTGGGGGTGGTGCCAATGCAAAGTTTTTCATCCCCACTCCAGCAGCCTCAAGCGAACAGACAGTAAATACAATCGGAGAAATTAATCAAGAAGCATATGCGACTCACGAAGATCCTTCAACATCTATTACGAATGAATCACTCACAAGTCTGCCACCGCCTCCATCAATGACTATGCAACGGTTCCCAAGCATGGATAACATAGCAAACAAGGGAATGGGGCTGATAGCTAATGGCAACGGCTCCTTTTCTTCTCACTCAAGACGAACATCGTCATGGAGTGGAAGCTTTAGTAATGCATTTAATCCTCCTAATTAA 4167 43.77 MASPPFQVEDQTDEDFFDKLVDDEFTGPGFGEGDDSNEVKAFSNLSIGKLGTLSEDSGCKGGIAARGNILVAEESISLVSSNSFGFDEVIESSDAAMGVDVALESTTSKNSGSTGTDVKEVQWSSFNIDSSQHHGFGSYSDLLTNLGDSSLDPIGNAGDNSKVESNNVYGIAENKVSDMTSFNHVQHQEDQAYGAATEQTTDGQDLYSSEYWENLYPGWRYDPNTGEWHQLDGGDATANIQGSFVANSLSAGVDVVSDQISEISYLQQTPESVVGTIAEGCTTGNVSNWNQVSQGSTEYPANMKFDPQYPGWYYDMIAQEWRSLDSYTQAVESTSTGHEQHNQNENASTSGFFPDKDHNLYGEYGQVETFGSQGLENQHQGGKWTGSASNYNQQDMNRWQPETVVRSDVITGFTGNQQPKNLYGSRGSVNYYADKQMGFDLIGTVTLSEQTRHNHDGSNEAFGFQSFAPSENLCQPLNQPNMEQSQEMHFSQDYYGSQKSEIFSQHPFQSGTQFSYAPNGGRSSSGRPPHALVNFGFGGKLIVMKDSSSLVTNSAYGSQDSVGSSISILNLMQVFMDKTDTASTGIGACDYFCTLCNHSFPGPLVGGNVGSKELNKWIDERISNCESPNMDYRRGGSLRLLLSLLKIAFQHYGKLRSPFGIDPILKESDCPESAVAKLFAYAKRNGVQLSEYGAPINCLQHLPSEEQIRATAVEVQNLLVSGRNKMALQCAQEGQLWGPALVLAAQLGDQFYVDTVKQMAHCQLVAGSPLRTLCLLIAGQSADVFFSDTTTSTGLPGAVNLSQQPAQIRANGMLDDWEENLGIITANRTKDDELVIIHLGDCLWKERDEVAAAHTCYLVAEANIESYSDSARLCLIGADHWKSPRTYASPEAIQLLQFFMFGYAKETCLNGWKNITKLAYLISGQRTELYEYSKVLGNSQFILLPFQPYKLIYAHMLAEVGKVSDSLKYCQAILKSMKTGRAPEVDTWRQLVSSLEERIKTHQQGGYSTNLAPTKLVGKLLTFIDSSTHRLIGTHPPPVPSTSQNSVHSNEHNHHPMGLRVASSQSTMAMSSLIPSSSMEPINEWMADSNRMTLANRSISEPNFGRMPRQVNQSKEAASYNAQGKASVYGGSSRFGRFSSQLFQKTMGLVLKSRPDRQAKLGEKNKFYYDEKLKRWVEEGIESQAEEAAPPPPPTTSAFQNGTLDYNINNAFKSESLPPNEGHEIRSPALPERSSGIPPIPPSSNQFSARGRMSVGSRYVDTFNKGGVTPSNLFQSPSAPSAKPGGGANAKFFIPTPAASSEQTVNTIGEINQEAYATHEDPSTSITNESLTSLPPPPSMTMQRFPSMDNIANKGMGLIANGNGSFSSHSRRTSSWSGSFSNAFNPPN 1388
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi22g00305 1388 MobiDBLite consensus disorder prediction 333 353 - -
Tesi22g00305 1388 Pfam Vesicle coat trafficking protein Sec16 mid-region 530 653 IPR024340 -
Tesi22g00305 1388 MobiDBLite consensus disorder prediction 1198 1216 - -
Tesi22g00305 1388 MobiDBLite consensus disorder prediction 1362 1388 - -
Tesi22g00305 1388 PANTHER RGPR-RELATED 1 1387 IPR024880 GO:0006914(InterPro)|GO:0007030(PANTHER)|GO:0012507(PANTHER)|GO:0048208(InterPro)|GO:0070971(PANTHER)|GO:0070973(PANTHER)
Tesi22g00305 1388 Pfam Sec23-binding domain of Sec16 925 1032 IPR024298 -
Tesi22g00305 1388 Pfam Sec23-binding domain of Sec16 715 903 IPR024298 -
Tesi22g00305 1388 CDD ACE1-Sec16-like 600 1003 - -
Tesi22g00305 1388 MobiDBLite consensus disorder prediction 1182 1250 - -
Tesi22g00305 1388 Gene3D - 526 990 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi22g00305 K20353 COPII coat assembly protein SEC16
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr1:21388777 Tesi22g00305 Tesi-Chr22:21545928 wgd
Tesi Tesi-Chr21:12965436 Tesi22g00305 Tesi-Chr22:21545928 wgd