AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi22g00310 ATGAATTCATCCATGGATTCCTACCAACTCGTCGACTCTCTCACTGCTCACATCTCTTTCTATCACTCTGCCACTCCTTCAACCTCTCAATCTCCTTCGGCAAACCGTAGGGCTTCGATTCTCCGCTGGTTTGCATCTCTCACAGTGCATCAACGGCAATCATATCTCACAATTATCGATGCGAAATTCACTGGAATTCTCCTTCAAATGCAGAACAAGCTTCGTAAACACGGTCATGGCTTCTTCATAATCCTCCCCGATATCCCCTCTTGTGAACACCCGTCCCTCCCCAGTCTGTGCTTTAGAAAATCAAGAGGACTCTTGGCTAGGGCAGGTGTGTCGAATGAATTGGAACGGTCGATATCTGGTGCGGTTAGAATGTTTGGTTCGAGAGAAGGAGAGAGAATTGAGGAATGTTCGTGTTCGGTAAGTGTTATTGATTCAATTACTGTTTCTGAAGAATTTGTTGGAGATTTGGATCGTTTTATTTCGGTGATGGATGGGGTTTCGAATGGGGGTTTTCTGAGAGGTGAAGAGAGTGATTTGGGATCGGCTTGGGAGGAATTACCATGGTTGAAGGCGAAAGGGTATTACTCCATGGAGGCGTTTGTGGCAAACAAGTTGGAGCTGGCTTTGAGGTTGTCATGGCTGAATTGTAATGGGAGCAAGAAACGAGGAGCAAAATTGAAAGAGAAGGCAAGTGTGGCAGGAGTTGCCGCGAATTTCTACTGGAGGAAGAAGGGGTGCTTAGACTGGTGGGGTGGGTTGGATCCTGGAGTGAGGAAGAAGATCTTTAAGACAGTATTATGCAAATCCACCAGATCTCTGACAAATGAGATTGTGAAGGGGGCAAATAGCGCCTTGGAGAATGAAATGTGGCTCTTCAGTGAAGGAGCTGAACAACCACTGAGATACAGCTCTACTTTATCATGTCAAAGGACCATCCCGGCACTCTCAGCAGCTGATGCGGAATTTGGCTTGGCCATCATTCCGGCTTCAGTTTCTGGAAAGCCTCCTTCCTTGGCCAATGTCTTCAATGGCTTGCTTGTGCTTCAGGATATTTCTGCTATGATATTAGCATGTTTGCATAGTGAATATGAGAAAGAGAAACTATTTTTCAGCACACTGTATTCTGTCCATACCATTTCGGATGGTATATTGAGGAAACTGCGAGGATTGCTTATGGTTGTTTCACTTGATTGTACAAAACTTGAACTTTTAGGAGAGGGAAATTTGAACTCCCCTCTAAATAAATCCAAAGAGAAGCTTGCTGTAGGCAATCGGAGAGGAAAAGGGAAGAGTCGTAATATGAAAAGGCTAAATCCTGTTCCAAGGTCAGCTGGTGCTGATTTCTCTCTTGAGAAACCTCTTGAGGAGCATGGGTGTGGGTTGGACTATAGAGATAATGCAGATTGTGTGGAGACTAATGGGATGACCCTTACACTTCAGGATAAGGTTTTTCACAGAGAGGCTTCATTATCAGGAGTTGAGATGGAACATGGCAAAGGATTGGTTGATGAAAAGGTCCAAACAGTTGGAAAGAAAAGTAGGAAAGAAAGCATTAAAAGCAAAAAGTCTAGCTTAAAAGAACCAGTTGCAATTGAAAATTATGAAGTAAGAATCGTGCAATCTGCCTCTCCCTCCGTTACTTTTCAACATGAGGCTGCAAAATCTAATCAGTCTGCTGATGCTTCAACTGTTCAGAATCTAAAAAATGATATTTCAATTGGAAGTGACATCCCCATGCCAAAATCAGCTTTTTTTAGTTCTGCCAATGAGCCTAATACAGAGGATAACATTAAAGTATCCCAAAACATCCAAGAAAATTCTGTTGTTGGATTGCATGAATGTAGCTCTCCTATTGGTTTGGACTGTTTTGATTCAAACAGAGCAGTTGGAAATCACAATAGTAATACTTCTTCCAGAAAGGAGACTTCAGATTATGCAATAGAAGGGCTTGATCATGTTCTTAGCAATGAGGAGCTTAGTCATCAATTTTCTGAACACTTAAGTCACTCTGTTTCAACATCAGTTGTTTCTCAAAAATCGAACGAAGCTATCGATTTGAAAGAGGAAACTCCCCCAATTCAGAAACAAGAAAGTGTAAACTCTCATGCTCATGCCCCCATGAGTTCTTCTGGATGCACATCATATGAGTGGCCTAGTGTAGGTCCTGTTAATTTGTCAACTGTCAACTCACATCATCTTCCGGCCGCCACAGACAGATTGCATCTTGATGTTGGTCGCAACTGGCGTAATCACTTCCACCAGGCCTTTGTTCCCACGACTCATCAGGCAAGAAATCCTTCGATTGAAGGTGGGTGCAGCCGGATCTTGTCACGAACTTTGCCAATGAGTTTAGATTGGCCCCCGATGGTACGAAGTGCCAGTAGATTGACTCCATCTATGGCCTACAACTATGATTCTGGATTTATCCCAAGGCTGCAGTCTTCTTACCGGCAGGGTTTCACAGCTCATGGGCTGAAGCTTAATGGAACAACGACTGAGGATGAAAGGAAATATTCGGGGGATGTCATGGAAATGTGTGACTTAACAAATGCACCAGAAATAGCAGACGAATGCGAGAGCCATTGGCTATCGGGAGAAGAATTTGAGGTGCATGCATTTTCTGGGAGTGATTATAATCAGTACTTTGGTGGTGGGGTAATGTACTGGAATACTTCTGATCACCCAGGGACAGGTTTCTCTCGTCCTCCTTCTCTTAGTTCTGAAGATAGCTCCTGGGCTTGGCATGAAGCAGACTTGAATAGATCTATTGATGATATGGTTGGCTTATCTTCATCTTATAGTACGAATGGTTTGACTTCACCACCTGCTGCTCCTTTTTGTTCTCCTTTTGATCCTTTGGGGCCTGGACACCAGGCCCTTAGTTATGTTATGCCAGGAAATGATGTAACTAGCAAGGTACTGCACTCCTCATCAACAGTGACAGATGGAGTGCCAGAAGAGATTGTCTCTGGATCTTTGGCTAATTCATCCGCTGGTGTTGTCGAAGCACAGAATGGTGATTCGTTTCCTTACCCCATTTTGCGGCCAATTATCATTCCAAGTATGTCTAGGAGAGGATCAAGATCTGAGTTTAAGCATAGTCATGATCGTAGAAGCCCATGTGTTCCTCCTACTAGACGGGAGCAACCTCAAATTAAGCGACCACCATCCCCTGTAGTGCTTTGTGTTCCACGCGCTCCACATCCTCCTCCACCCTCTCCTGTTGGTGAATCCAGAAAACATAAGGGTTTCCCAACTGTGAGGTCTGGTAGCTCTAGCCCAAGGCACTGGGGCATGAGAAGTTGGTACCATGATGGAACTAATTGTGAAGAAGCTCGCCTCTGTGTGGATGGTGCCGAAGTTATTTGGCCTTTGTGGAGAAATAAAGGCCTTTCAGCGACTCCAATGATTCAGCCTCTACCAGGGGCTTTGCTGCAAGATCGTCTAATTGCAATTTCTCAGCTCTCTCTTGATCAGGAACATCCAGATGTTGCATTTCCTCTGCAACCACTGGAATTACTGAACTGTCCTGCTCGTAAGACATCTCTTTCTTTGCTGCATAGTTTCCTTCATGATGAAATCGACTCTTTCTGCAAGCAGATGACTGATGGTTCATATCTGATTGTGGAATCTAAGGTTGCTGCCGATAATTTTATCAGGAAGCCTTACATTAATTGGGCTGTCAAGAGGGTCACACGGTCTCTCCAAGTTCTATGGCCCCGGTCCAGGACTAACATCTTTGGCTCAAATGCAACTGGTTTGTCCCTTCCAACAAGTGATGTGGATCTTGTAGTCTGTCTCCCTCCAGTAAGGAATTTGGAACCCATCAAAGAAGCTGGGATATTGGAGGGTCGTAATGGAATTAAAGAAACTTGCCTTCAGCATGCAGCTAGGTATCTTGCTAATCAGGAGTGGGTTCAAAATGACTCTCTTAAGGCTGTGGAAAATACAGCTATACCAATTATCATGCTCGTGGCTGAAGTTCCTCGTGATCTTATTGTCGCTACTGGAAATGCTTCTAATGTTCAAATACCAAAAGAGGAATCAACTCAAAGGACTGGTGAACAAGGAAATATTATTCATTATGATATGGTGGGTTCTGAAAACTCCTCTTTGCCAAAGTGCTCACAGATGAAAGTTGATAACGGCATGGATGTGAAATCTGTTCGTCTGGACATCAGTTTTAAGTCACCATCACATACAGGGCTTCAAACTACAGAATTGGTTAAAGAGTTGACTGAGCAATTTCCTGCAGCTACGCCCCTCGCTTTGGTATTAAAACAGTTTCTGGCAGATCGTAGCCTGGACCAGTCCTACTCAGGCGGCTTAAGTTCATATTGTTTGGTGTTACTGATCACACGGTTTCTTCAGCATGAGCACCATCTTGGCCGGCCTATTAAGCAAGTAAAAGTTCTGTCTGATAAGATGACAAAGAATTTCATTGCTCAACCATCATGA 4467 43.97 MNSSMDSYQLVDSLTAHISFYHSATPSTSQSPSANRRASILRWFASLTVHQRQSYLTIIDAKFTGILLQMQNKLRKHGHGFFIILPDIPSCEHPSLPSLCFRKSRGLLARAGVSNELERSISGAVRMFGSREGERIEECSCSVSVIDSITVSEEFVGDLDRFISVMDGVSNGGFLRGEESDLGSAWEELPWLKAKGYYSMEAFVANKLELALRLSWLNCNGSKKRGAKLKEKASVAGVAANFYWRKKGCLDWWGGLDPGVRKKIFKTVLCKSTRSLTNEIVKGANSALENEMWLFSEGAEQPLRYSSTLSCQRTIPALSAADAEFGLAIIPASVSGKPPSLANVFNGLLVLQDISAMILACLHSEYEKEKLFFSTLYSVHTISDGILRKLRGLLMVVSLDCTKLELLGEGNLNSPLNKSKEKLAVGNRRGKGKSRNMKRLNPVPRSAGADFSLEKPLEEHGCGLDYRDNADCVETNGMTLTLQDKVFHREASLSGVEMEHGKGLVDEKVQTVGKKSRKESIKSKKSSLKEPVAIENYEVRIVQSASPSVTFQHEAAKSNQSADASTVQNLKNDISIGSDIPMPKSAFFSSANEPNTEDNIKVSQNIQENSVVGLHECSSPIGLDCFDSNRAVGNHNSNTSSRKETSDYAIEGLDHVLSNEELSHQFSEHLSHSVSTSVVSQKSNEAIDLKEETPPIQKQESVNSHAHAPMSSSGCTSYEWPSVGPVNLSTVNSHHLPAATDRLHLDVGRNWRNHFHQAFVPTTHQARNPSIEGGCSRILSRTLPMSLDWPPMVRSASRLTPSMAYNYDSGFIPRLQSSYRQGFTAHGLKLNGTTTEDERKYSGDVMEMCDLTNAPEIADECESHWLSGEEFEVHAFSGSDYNQYFGGGVMYWNTSDHPGTGFSRPPSLSSEDSSWAWHEADLNRSIDDMVGLSSSYSTNGLTSPPAAPFCSPFDPLGPGHQALSYVMPGNDVTSKVLHSSSTVTDGVPEEIVSGSLANSSAGVVEAQNGDSFPYPILRPIIIPSMSRRGSRSEFKHSHDRRSPCVPPTRREQPQIKRPPSPVVLCVPRAPHPPPPSPVGESRKHKGFPTVRSGSSSPRHWGMRSWYHDGTNCEEARLCVDGAEVIWPLWRNKGLSATPMIQPLPGALLQDRLIAISQLSLDQEHPDVAFPLQPLELLNCPARKTSLSLLHSFLHDEIDSFCKQMTDGSYLIVESKVAADNFIRKPYINWAVKRVTRSLQVLWPRSRTNIFGSNATGLSLPTSDVDLVVCLPPVRNLEPIKEAGILEGRNGIKETCLQHAARYLANQEWVQNDSLKAVENTAIPIIMLVAEVPRDLIVATGNASNVQIPKEESTQRTGEQGNIIHYDMVGSENSSLPKCSQMKVDNGMDVKSVRLDISFKSPSHTGLQTTELVKELTEQFPAATPLALVLKQFLADRSLDQSYSGGLSSYCLVLLITRFLQHEHHLGRPIKQVKVLSDKMTKNFIAQPS 1488
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi22g00310 1488 SUPERFAMILY Nucleotidyltransferase 1226 1415 IPR043519 -
Tesi22g00310 1488 MobiDBLite consensus disorder prediction 691 710 - -
Tesi22g00310 1488 Gene3D - 1380 1482 - -
Tesi22g00310 1488 PANTHER POLY(A) RNA POLYMERASE 271 1470 IPR045862 GO:0003729(PANTHER)|GO:0004652(PANTHER)|GO:0005730(PANTHER)|GO:0031123(PANTHER)|GO:0031499(PANTHER)|GO:1990817(InterPro)
Tesi22g00310 1488 MobiDBLite consensus disorder prediction 1027 1095 - -
Tesi22g00310 1488 MobiDBLite consensus disorder prediction 425 450 - -
Tesi22g00310 1488 MobiDBLite consensus disorder prediction 1063 1079 - -
Tesi22g00310 1488 Pfam Poly(A) RNA polymerase, mitochondrial-like, central palm domain 1231 1328 IPR054708 -
Tesi22g00310 1488 Gene3D Beta Polymerase, domain 2 1224 1336 IPR043519 -
Tesi22g00310 1488 MobiDBLite consensus disorder prediction 696 710 - -
Tesi22g00310 1488 MobiDBLite consensus disorder prediction 1029 1046 - -
Tesi22g00310 1488 SUPERFAMILY PAP-OAS1 substrate-binding domain 1420 1466 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi22g00310 - -