AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tesi22g00312 | ATGGCTTCGTCCATCTCGCTGAAGACACTCGTCGCCCAAAACTTCCTCAACAAGCTCCTACACCACCCAATTCGTCCGGCTGCAGTAGCTCCATATGCCGCCCGTTCCTTCAACACCAATGCTCAAATGCGCGATTACGACGCCGATGACCGGAGCACCGACATTGATCGCCGATCTGATCAGTCCATCTCTCGTCGCCGTGATTTCCCTCCCAGTCTCTTTCCAGATGTGTTTGATCCGTTCTCTTCGACGAGGAGCTTAAGCCAGGTGCTGAATCTGATGGATCAGTTCATGGAGAATCCCTTCCTATCTGCTCCGAGAGGAATGGGAGCTGGATCCAGGAGAGGATGGGATGCCAAGGAAGACGAGACTGCTCTGTTTTTGAGGATCGACATGCCTGGGTTGGAGAAAAAAGACGTCAAGGTTTCGGTGGAGCAGAACACGCTGATTATAAGAGGAGAAGGCGAGAAAGAATCGGAAGATGAAGAGAGCGTAAGGAGGTATACGAGCAGGATCGATCTGCCTGAGAAGCTGTACAGCACAGACCAAATCAAAGCAGAGATGAAGAACGGAGTGCTTAAAGTTGTGGTTCCGAAGGTGAAGGAAGATGAAAGGAAGAATGTTTTCCAGGTTCTAGTCGAGTGA | 645 | 50.7 | MASSISLKTLVAQNFLNKLLHHPIRPAAVAPYAARSFNTNAQMRDYDADDRSTDIDRRSDQSISRRRDFPPSLFPDVFDPFSSTRSLSQVLNLMDQFMENPFLSAPRGMGAGSRRGWDAKEDETALFLRIDMPGLEKKDVKVSVEQNTLIIRGEGEKESEDEESVRRYTSRIDLPEKLYSTDQIKAEMKNGVLKVVVPKVKEDERKNVFQVLVE | 214 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tesi22g00312 | 214 | PANTHER | 23.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL | 19 | 205 | IPR044656 | - | |
| Tesi22g00312 | 214 | CDD | ACD-sHsps-like | 118 | 191 | - | - | |
| Tesi22g00312 | 214 | FunFam | 23.6 kDa heat shock protein mitochondrial | 68 | 213 | - | - | |
| Tesi22g00312 | 214 | MobiDBLite | consensus disorder prediction | 43 | 68 | - | - | |
| Tesi22g00312 | 214 | SUPERFAMILY | HSP20-like chaperones | 85 | 206 | IPR008978 | - | |
| Tesi22g00312 | 214 | MobiDBLite | consensus disorder prediction | 44 | 65 | - | - | |
| Tesi22g00312 | 214 | ProSiteProfiles | Small heat shock protein (sHSP) domain profile. | 108 | 214 | IPR002068 | - | |
| Tesi22g00312 | 214 | Pfam | Hsp20-alpha crystallin family | 118 | 210 | IPR002068 | - | |
| Tesi22g00312 | 214 | Gene3D | - | 74 | 211 | IPR008978 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tesi22g00312 | K13993 | HSP20 family protein |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Tesi | Tesi-Chr21:12673362 | Tesi22g00312 | Tesi-Chr22:21739991 | dispersed | |
| Tesi | Tesi-Chr22:21139892 | Tesi22g00312 | Tesi-Chr22:21739991 | dispersed | |
| Tesi | Tesi-Chr22:21739991 | Tesi7g01073 | Tesi-Chr7:27143934 | dispersed | |
| Tesi | Tesi-Chr22:21739991 | Tesi2g02203 | Tesi-Chr2:60128123 | transposed |