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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi22g00320 ATGTCTGATTGCCTGCTCTTTTTTTATTTATTTAAATGTTTGGAAATTTATTGTTTTTTTCTCCATTATCTGAGTTTTTGGTGTCTTTTATTATCAGAGAAAAGGCGTGCTGAGGCTGCTAGAATTAGGGAGAAATACCCAGACAGGATTCCGGTGATCGTGGAAAAGGCGGAAAGAAGTGATATTCCCAACATTGATAAGAAGAAGTACCTAGTCCCTGCTGACTTGACTGTGGGACAATTTGTCTATGTGATCCGCAAGAGAATCAAATTGAGTGCAGAAAAGGCAATCTTCATATTCGTAGACAATGTTCTCCCACCTACGGGGGCAATTATGTCTACCATATATGACGAAAAGAAGGATGAAGATGGGTTTCTATATGTTACCTACAGCGGGGAAAACACATTTGGGCACCAGAAGCTACTGTAG 429 39.86 MSDCLLFFYLFKCLEIYCFFLHYLSFWCLLLSEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFGHQKLL 142
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi22g00320 142 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A-1B LIGHT CHAIN 3-RELATED 33 137 IPR004241 GO:0006995(PANTHER)
Tesi22g00320 142 SUPERFAMILY Ubiquitin-like 32 137 IPR029071 -
Tesi22g00320 142 CDD Ubl-ATG8 33 134 - -
Tesi22g00320 142 FunFam Autophagy-related protein 25 137 - -
Tesi22g00320 142 Gene3D - 23 137 - -
Tesi22g00320 142 Pfam Autophagy protein Atg8 ubiquitin like 34 137 IPR004241 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi22g00320 K08341 GABA(A) receptor-associated protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr22:21992886 Tesi2g00899 Tesi-Chr2:19230031 dispersed
Tesi Tesi-Chr1:21793238 Tesi22g00320 Tesi-Chr22:21992886 wgd