AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi22g00326 ATGACAAGCTGTTTTCCTTCTGGATCGACAGTGGTTTCCGGTGTATCTGAAATCAATGCCGGGAGAGAGACGGGATCTTACGTCAATGTCGCCGGAGTTCTCTATAAATGGACGAATTACGGTAAAGGATGGAGATTGAGGTGGTTTTTGTTGCGGAATGGTGTTCTTTCTTACTCGAAGATTCGGCTATCGGAGAATGTGAATCTTTTGTCGACGAGTGATGAAGTTCGAGTGATCGGTGATGTTTCGTCCGCTCGTTTGTCGCGTCTCAACAGCAGCGGTAGACGAAAGCAACAGAAAACGATTGGCGTCGTTCATCTCAAGATCTCATCATTTCGTGAGAGCAAGTCTGATGACAAACGATTTTACATATTTACTGCTACGAAGACGCTTCATCTGAGAACTGATTCAAAGAGAGATCGTGTGGCTTGGGTAGATGCTTTAGTCTCTACTCGAAGCCTATTTTCCCTGAGACCACTACATGATACGCTTTCCCTTGTCCCGAGTGATAGATTTCTATCAACAGAAAAGCTTAGAAGTCGCTTACTTGAAGAGGGAATCAGCGAGGTACTTGTCAAGGACTGCGAGCAGATCATGCTGTCAGAATTTTCAGAGATACAAGGACAACTAAAGGTTCTTTGTGAGGATCGATCCAACTTGCTCGACACCATAAGGCAGTTGGAGGTAGGCCTTACTTAA 699 44.92 MTSCFPSGSTVVSGVSEINAGRETGSYVNVAGVLYKWTNYGKGWRLRWFLLRNGVLSYSKIRLSENVNLLSTSDEVRVIGDVSSARLSRLNSSGRRKQQKTIGVVHLKISSFRESKSDDKRFYIFTATKTLHLRTDSKRDRVAWVDALVSTRSLFSLRPLHDTLSLVPSDRFLSTEKLRSRLLEEGISEVLVKDCEQIMLSEFSEIQGQLKVLCEDRSNLLDTIRQLEVGLT 232
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi22g00326 232 Gene3D - 26 154 IPR011993 -
Tesi22g00326 232 ProSiteProfiles PH domain profile. 27 153 IPR001849 -
Tesi22g00326 232 PANTHER SESQUIPEDALIAN 23 181 IPR045188 -
Tesi22g00326 232 SMART PH-update 28 155 IPR001849 -
Tesi22g00326 232 Pfam Pleckstrin homology domain 35 148 - -
Tesi22g00326 232 SUPERFAMILY PH domain-like 30 150 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi22g00326 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr22:22114112 Tesi24g00122 Tesi-Chr24:8662358 dispersed
Tesi Tesi-Chr22:22114112 Tesi2g01986 Tesi-Chr2:45800187 transposed