AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi22g00329 ATGTCGGTTTGCAAGGTCGTAGATCCTCGTATCAATGGCATCAAAACTAGAATTCGCGTCGTCCCCAATTTCCCTCAACCAGGGATTATGTTTCAAGACATCACAACTTTACTACTTGATCCAAAAGCCTTCAAGAACACGGTCGATTTATTCGTCGAGAGATACAAAGGGAAAAACATATCCGTCGTTGCAGGAATTGAGGCTCGAGGATTTATATTTGGTCCCCCAATTGCATTGGCGATTGGAGCAAAGTTTGTTCCCTTGAGAAAACCAAGAAAGCTACCCGGTGAAGTTATTTCGGAGGAGTATATCCTGGAATATGGAAGGGATTGTCTTGAAATGCACATAGGAGCAGTTGAATCTGGTGAACGTGCTTTGGTAATTGATGATTTGATAGCTACTGGTGGTACTCTTTGTGCAGCAATTAAATTACTTGAGCGTGTTGGGGCTGAAGTGGTTGAATGTGCATGTGTAATTGAACTACCAGATCTAAAGTTGTATTCTGGTGAGAGTGCATCGCAAACCCATCTCCATGCTCTTCACTCTTTGCAGTCAAAGGGTGCTGCTGTAAATGTGTTTTGCAATGCTACTAGTGAGTAG 600 42.83 MSVCKVVDPRINGIKTRIRVVPNFPQPGIMFQDITTLLLDPKAFKNTVDLFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLRKPRKLPGEVISEEYILEYGRDCLEMHIGAVESGERALVIDDLIATGGTLCAAIKLLERVGAEVVECACVIELPDLKLYSGESASQTHLHALHSLQSKGAAVNVFCNATSE 199
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi22g00329 199 Hamap Adenine phosphoribosyltransferase [apt]. 14 183 IPR005764 GO:0003999(InterPro)|GO:0005737(InterPro)|GO:0006168(InterPro)
Tesi22g00329 199 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 5 165 IPR050120 GO:0003999(PANTHER)|GO:0005829(PANTHER)
Tesi22g00329 199 Pfam Phosphoribosyl transferase domain 51 162 IPR000836 -
Tesi22g00329 199 FunFam Adenine phosphoribosyltransferase 1 2 181 - -
Tesi22g00329 199 SUPERFAMILY PRTase-like 12 167 IPR029057 -
Tesi22g00329 199 CDD PRTases-typeI 48 171 IPR000836 -
Tesi22g00329 199 NCBIfam adenine phosphoribosyltransferase 14 165 IPR005764 GO:0003999(InterPro)|GO:0005737(InterPro)|GO:0006168(InterPro)
Tesi22g00329 199 Gene3D - 3 186 IPR029057 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi22g00329 K00759 adenine phosphoribosyltransferase [EC:2.4.2.7]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr15:28997706 Tesi22g00329 Tesi-Chr22:22181268 dispersed
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tesi1g00525 . 71 565 PRT gene family AT2G16570 85.081 0.0 855.0
Tesi1g00847 . 21 208 PRT gene family AT3G27440 27.184 4.58e-17 80.9
Tesi1g02244 . 1 466 PRT gene family AT1G55810 77.579 0.0 791.0
Tesi2g01642 . 87 285 PRT gene family AT4G34740 27.751 2.82e-07 51.6
Tesi3g01239 . 48 191 PRT gene family AT1G55810 65.563 3.74e-61 195.0
Tesi3g01240 . 174 469 PRT gene family AT4G26510 90.878 0.0 562.0
Tesi4g01130 . 101 224 PRT gene family AT1G55810 31.452 5.23e-12 66.2
Tesi4g01621 . 6 173 PRT gene family AT3G27190 63.095 2.18e-65 205.0
Tesi8g00625 . 30 208 PRT gene family AT3G27440 22.275 7.28e-07 48.5
Tesi10g00618 . 63 188 PRT gene family AT5G40870 27.778 1.41e-11 66.2
Tesi11g01094 . 140 279 PRT gene family AT2G16570 27.879 6.97e-08 53.9
Tesi13g00393 . 2 225 PRT gene family AT3G53900 74.554 1.17e-125 355.0
Tesi15g00405 . 5 155 PRT gene family AT5G11160 74.834 2.16e-76 228.0
Tesi18g00133 . 31 208 PRT gene family AT3G27440 27.619 3.06e-13 69.3
Tesi18g00482 . 39 253 PRT gene family AT1G55810 22.936 8.40e-08 53.5
Tesi18g00991 . 25 448 PRT gene family AT3G27440 80.37 0.0 719.0
Tesi21g00855 . 77 565 PRT gene family AT2G16570 83.845 0.0 848.0
Tesi21g00885 . 31 244 PRT gene family AT3G27440 26.923 1.37e-18 85.5
Tesi22g00121 . 69 566 PRT gene family AT2G16570 84.77 0.0 867.0
Tesi22g00329 . 9 166 PRT gene family AT4G22570 86.076 7.72e-98 280.0
Tesi24g00308 . 1 187 PRT gene family AT1G71750 65.775 8.18e-91 261.0