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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi22g00332 ATGGTGGGTTTTTCATCTGTTCCTCACTGGCTTGAAGCTCTTCTGGGAGAGAAGTTCTTCAATCCATGTTTCATTCATGAGTCTGCGAAGAAAAACGAGAAGAACGTGTTTTGTTTGGATTGTTGCACCAGCATCTGCCCTCAGTGCTTGTCTCCTCACCGTTCTCACCGACTCTTGCAGATTCGAAGGTATGTTTATCACGACGTTATTAGGTTGGACGATGTTGAGAAATTAATCGACTGTGCCTTTGTTCAAGCCTACACGACGAACAGTGCAAAGGTAGTATTTTTAAATCAAAGGCCTCAGTCTCGTCCCTTCAGAGGCTCCGGCAACATCTGCAGCACCTGCGACAGGAGCCTGCAAGACCCATATCTCTTCTGTTCTCTTGCCTGCAAGGTTCATCATCTGGTGAGAAGCGAAGGTGGGGTGTCGAAATATCTCTACGAGTGCGAATTTCTTCCCTTACCAGAAGGAGGAAAAGGTGAGAGCTTTTGCGAGTTCGAAGACGGACAAATGACTCCAGACTCGGTCCTTGAATCGGCTATTTCGCTACGAACATCGTCTGGCTCGAGCGCTAGTGGTGGGGCCATGGGTTGCAAGAACCTTGCGTGCACTGCTACAACCGAGTTCGTGAGGAAGAAACGTAGTAGCGTTTCGGTTTCTCGGACGACGTGCCGGCCGATATGCTCACCGGCGTCCGAAATTGCCGTCAATATGAACCGGAGAAAGGGTATCCCGCACCGGTCGCCGCTTTACTGA 759 49.93 MVGFSSVPHWLEALLGEKFFNPCFIHESAKKNEKNVFCLDCCTSICPQCLSPHRSHRLLQIRRYVYHDVIRLDDVEKLIDCAFVQAYTTNSAKVVFLNQRPQSRPFRGSGNICSTCDRSLQDPYLFCSLACKVHHLVRSEGGVSKYLYECEFLPLPEGGKGESFCEFEDGQMTPDSVLESAISLRTSSGSSASGGAMGCKNLACTATTEFVRKKRSSVSVSRTTCRPICSPASEIAVNMNRRKGIPHRSPLY 252
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi22g00332 252 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 5 251 - -
Tesi22g00332 252 SUPERFAMILY B-box zinc-binding domain 22 65 - -
Tesi22g00332 252 Pfam PLATZ transcription factor 62 133 IPR006734 -
Tesi22g00332 252 ProSiteProfiles Zinc finger B-box type profile. 23 61 IPR000315 GO:0008270(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi22g00332 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr15:27508774 Tesi22g00332 Tesi-Chr22:22303766 dispersed
Tesi Tesi-Chr22:22303766 Tesi24g01039 Tesi-Chr24:32051782 dispersed
Tesi Tesi-Chr1:21969413 Tesi22g00332 Tesi-Chr22:22303766 wgd
Tesi Tesi-Chr21:12438971 Tesi22g00332 Tesi-Chr22:22303766 wgd
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Tesi PLATZ 3.4e-27 No_clan TF PLATZ