AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi22g00333 ATGGCCTGCAAATCCACCACACTCTTCTTCTCTTTCTTCTTCCTCTCTACCCTCTTATACTCCCAATCCGATCTAGAATCAGATACTTCTGAATGCAAAGGCAGGTGGATCTACATTAGAGAACTCCCATCTCGATTCAATCTTGATCTCCTAAGCAACTGCTCCAACTACCCAATCTACACCAATTTCTGCCCTTACTTAGCCAACCATGGCCTCGGCCACAAAACCCATAAAAACTCCCACAGTTGGTACCGAACAGACCCCTTTATGCTCGAACTCCTTTTCCATCGCCGAATCCTCGAATACCCTTGTCTCTCCCCAAACCCCAACACTTCTGATGCAATTTTCCTCCCTTACTATGCTGGTCTCGACGCGCTTCGCTATCTCTACGGCTCCGATTTCAATTCAAGCGCCGAACATGGCCTCGAATTATTCAGATTCCTGCAACAGGACTCCAAACATATCTGGGATAGAAATGATGGGCTTGATCATTTCTTGGTCATGGCTCGTCCCGCCTGGGACTTCTCTCAGCCACTAATGAACGATCCACCAATCTGGGGTACTTCAATTTTAGAATTACCTGAATTCTACAACGTAGCAGCTCTAACACTGGAATCACGACCCTGGCCGTGGCAGGAACAGGCAATTCCGCATCCAACTTCGTTCCATCCTTCAAATCTCGCAAAGATGGAGTCTTGGATTGGACGTGTTCGTCGCGCCAGACGCTCGACACTCATGGTCTTTGCTGGTGGGGGTGGGGTTTCTTCGGCACCCAATATCCGGCATAGCATCAGGGATGAGTGCAAGAACAGTAGCAATAGCAATAGCAGTAGCAGTAGCAGTAGCAGTAACAGTAGTGGCCTATCCAAGGTGTGTGAAATTGTTGATTGCTCTAATGGGGTATGTGAGCATGACCCAATTTTGTACATGAAGCCAATGTTGCAATCGACCTTTTGCCTGCAACCACCAGGGGATACGCCGACACGGCGGTCGACCTTTGATGGGATACTTGCTGGGTGTATACCTGTGTTCTTTGAGGAACTCTCGGCAAAATCGCAATTCGGGTGGCATTTGCCGGAGGAACAATATGGGGAATTCTCGGTTTTTATACCGAAGGAGGAGGTGGTGTCGAAGGGGCTGAGGATCGTCGATGTGCTATTGGGTATTGATAAAAATGAAGTTAGGAGAATGAGGGAGAGGGTTATTGAGCTCATGCCAAGGATTATGTACAGAAGGCATGGAAGTTCTCTGGGGTTGAGTGCAAAGAAGGATGCCTTTGATCTTGCAGTGGAGGGCTCAATAAACAGGATCAAATCCAGAGTTACAGCAGGATTGTCAGTTTGA 1344 47.99 MACKSTTLFFSFFFLSTLLYSQSDLESDTSECKGRWIYIRELPSRFNLDLLSNCSNYPIYTNFCPYLANHGLGHKTHKNSHSWYRTDPFMLELLFHRRILEYPCLSPNPNTSDAIFLPYYAGLDALRYLYGSDFNSSAEHGLELFRFLQQDSKHIWDRNDGLDHFLVMARPAWDFSQPLMNDPPIWGTSILELPEFYNVAALTLESRPWPWQEQAIPHPTSFHPSNLAKMESWIGRVRRARRSTLMVFAGGGGVSSAPNIRHSIRDECKNSSNSNSSSSSSSSNSSGLSKVCEIVDCSNGVCEHDPILYMKPMLQSTFCLQPPGDTPTRRSTFDGILAGCIPVFFEELSAKSQFGWHLPEEQYGEFSVFIPKEEVVSKGLRIVDVLLGIDKNEVRRMRERVIELMPRIMYRRHGSSLGLSAKKDAFDLAVEGSINRIKSRVTAGLSV 447
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi22g00333 447 Pfam Exostosin family 32 377 IPR040911 -
Tesi22g00333 447 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 18 435 IPR004263 GO:0006486(InterPro)|GO:0016757(InterPro)
Tesi22g00333 447 MobiDBLite consensus disorder prediction 266 287 - -
Tesi22g00333 447 MobiDBLite consensus disorder prediction 269 287 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi22g00333 K20888 xyloglucan galactosyltransferase MUR3 [EC:2.4.1.-]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr22:22338928 Tesi7g00478 Tesi-Chr7:8891169 dispersed
Tesi Tesi-Chr1:6974465 Tesi22g00333 Tesi-Chr22:22338928 wgd
Tesi Tesi-Chr21:12406930 Tesi22g00333 Tesi-Chr22:22338928 wgd