AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi22g00338 ATGGAAGGATCAGCAAAACAGCCTCCAATCTCCGAAAGGTTTCAGAAATTCGCTTTAGCTTTCAAGACCAAAACCATGGAGTTCTTCGCCGAGGAAGAAGAAGAAGATGCTGTCGGAGATGAATTCGACGGTCTCTCCCTTCTCGACTCTGCCGAAGAAATCATCACCGGCCAGAGAGTCGTCGTCATAAAGCCCGACCAGGACATCAAACCTGCAACACCCTCCTCCTCCTCCCAAGCTTCCAGCTTCACCAATCTCCAAATCCTCCATACCCTTTTCTCTTCTCTCTTCGCTACCCTTTCCTCCTTCGAAGCTTCCTATCTTCTTCTTCAGACGGCTCACGACCCTTTCGACGAAGACACCATTAAAGCTGCCGATCGAGCTTCAGTCTCCCACCTCCAGAAGCTATTGGATATCAAGAATTGCTATTCTAGTTTCCGTAAGAACCCTAGTCTTAACCCTAAATTTCCTTTCTTGTCTCCTTTGGAAGCTCAAGTTGGGGAGAATCAGAACAAGCTTCGTTCTTTGGAGATGGTCGTTAATCGGTTGCAGTCCGAAATTGATCACAAAGACGGGGAGGTTTCAATGATGAAGCAAAAGTTGGGGAAGATTCAAAAATCGAATTTGAGGTTGTCGAAGAGGTTATCGGAGTTGAATTGTTCTTCTTCGCTGTCTTCTACTACTCCTCTGTCTTTTACTTCTCCTCCTGAGGTTTTGTTATCAGTAGGACTTTTCAATTTGGTATTACAGGATGCTTGCAAATCGACGCGTAGCTTTACCAAGCTTTTGATTGATTTGATGGAGAAAGATGGGTGGGATTTGGATTTGGTGGCGAATTATGTTCATCCGGATATTGAGTATGTGAAGAGAGGGCATAATCGATATGCGTTGCTGTCTTATGTTTGTCTAGGGATGTTTCAAGGTTTTGATTCAGAGGGGTTTAGTTTAAGAGAGCATGAAATTGAGTGTAATGGCAATGGTAAGGGTGTTAATTTGAATTTTCGGAGGAAGAATTCTCTCAAGCAATTCGTCGAACATGGCACAGGTGATGCAATGGAGATTTTAAGTAGGAACCCGAATGGTGATTTTGCGACGTTTTGCGATGAGAAGTACCAGAAGCTCATCCATACTTCCATGGAATCCTCCCTTTTCCGAAATTTTGATCAGAATGAACTTGAATTGAATTCATGGAAGTCGTCGATGGCTTTATATGAGTCATTTGTGAACATGGCTAGCTCAATATGGATGCTGCATAAGTTGGCCTTCTCGTTCAATCCCATTGTTGAGATTTTTCAGGTGGAGCGAGGGGTGGATTTCTCAATGGTGTTCATGGAAAATGTCACTCAGAGGAGTGTCACACCGGGTAAAACAAGGGCCAAAGTGGGGTTCACGGTGACTCCGGGCTTTAGAATTGGGAGGACCATCATTCAGTCTCAGGTATATCTAATTGGCATGAGATGTGTTGAGTAA 1470 44.08 MEGSAKQPPISERFQKFALAFKTKTMEFFAEEEEEDAVGDEFDGLSLLDSAEEIITGQRVVVIKPDQDIKPATPSSSSQASSFTNLQILHTLFSSLFATLSSFEASYLLLQTAHDPFDEDTIKAADRASVSHLQKLLDIKNCYSSFRKNPSLNPKFPFLSPLEAQVGENQNKLRSLEMVVNRLQSEIDHKDGEVSMMKQKLGKIQKSNLRLSKRLSELNCSSSLSSTTPLSFTSPPEVLLSVGLFNLVLQDACKSTRSFTKLLIDLMEKDGWDLDLVANYVHPDIEYVKRGHNRYALLSYVCLGMFQGFDSEGFSLREHEIECNGNGKGVNLNFRRKNSLKQFVEHGTGDAMEILSRNPNGDFATFCDEKYQKLIHTSMESSLFRNFDQNELELNSWKSSMALYESFVNMASSIWMLHKLAFSFNPIVEIFQVERGVDFSMVFMENVTQRSVTPGKTRAKVGFTVTPGFRIGRTIIQSQVYLIGMRCVE 489
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi22g00338 489 PANTHER PROTEIN GRAVITROPIC IN THE LIGHT 1 11 482 IPR040225 GO:0009639(InterPro)|GO:0009959(InterPro)
Tesi22g00338 489 Pfam Plant protein of unknown function (DUF641) 87 214 IPR006943 -
Tesi22g00338 489 Coils Coil 166 193 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi22g00338 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr22:22440142 Tesi22g00356 Tesi-Chr22:22835756 dispersed
Tesi Tesi-Chr1:22034740 Tesi22g00338 Tesi-Chr22:22440142 wgd