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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi22g00339 ATGTCATCTTCTTCTTCGCTGGACCACCTCTCTCCCTCCTCCGAGCAGCTCTGTTGCGTCCATTGCAACTTTTGCGACACCGTCCTCGCGGTGAGCGTTCCTTGCAGCAGTTTGTTCAAGATTGTTACTGTTCGATGCGGTCACTGCGCCAACCTCCTCTCTGTCAACATGCGTGGGTTACTTCTTTCTTCAGCTAATCAGCTTCAACTTGGACATTCTTTCTTCTCTCCTTCCCGTAATCTTCTGGAAGAGATCCCAAGCCCACAGCTGAACTTGTTGATCGATCCCCCGAACCCAAATGACTTGGGGGTATCAGTTCGAGAAGGAACCGATGATCTCCCTAGACCCCCAGTTGTTAACAGACCCCCGGAGAAGCGACAGAGAGTCCCATCCGCGTACAACCGATTCATCAAGGACGAGATCCAACGCATCAAGGCCGGCAATCCTGATATATCCCACAGAGAGGCATTCAGTGCAGCTGCAAAGAATTGGGCCCACTTCCCACACATCCATTTTGGTCTCATGCCTGATCAGACAGTGAAGAAAACTAACGTGCGCCAACAGGAAGGAGAGGATGTTCTCATGAAAGATGGATTTTTTGCTTCAGCTAATCTGGGTGTCTCCCCCTACTAA 633 50.55 MSSSSSLDHLSPSSEQLCCVHCNFCDTVLAVSVPCSSLFKIVTVRCGHCANLLSVNMRGLLLSSANQLQLGHSFFSPSRNLLEEIPSPQLNLLIDPPNPNDLGVSVREGTDDLPRPPVVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNVRQQEGEDVLMKDGFFASANLGVSPY 210
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi22g00339 210 CDD HMG-box-SF 128 164 - -
Tesi22g00339 210 FunFam Axial regulator YABBY 119 190 - -
Tesi22g00339 210 Gene3D High mobility group box domain 118 184 IPR036910 -
Tesi22g00339 210 PANTHER PROTEIN YABBY 6-RELATED 13 183 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
Tesi22g00339 210 Pfam YABBY protein 13 174 IPR006780 GO:0007275(InterPro)
Tesi22g00339 210 SUPERFAMILY HMG-box 118 167 IPR036910 -
Tesi22g00339 210 MobiDBLite consensus disorder prediction 105 126 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi22g00339 K25796 plant-specific transcription factor YABBY family protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr10:37630279 Tesi22g00339 Tesi-Chr22:22453217 dispersed
Tesi Tesi-Chr15:29856658 Tesi22g00339 Tesi-Chr22:22453217 dispersed
Tesi Tesi-Chr19:10189989 Tesi22g00339 Tesi-Chr22:22453217 dispersed
Tesi Tesi-Chr22:22453217 Tesi4g00142 Tesi-Chr4:3405291 dispersed
Tesi Tesi-Chr1:6915379 Tesi22g00339 Tesi-Chr22:22453217 wgd
Tesi Tesi-Chr21:12327106 Tesi22g00339 Tesi-Chr22:22453217 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tesi1g00355 . 15 225 C2C2-YABBY Transcription Factor family AT2G45190 39.631 7.40e-35 123.0
Tesi4g00142 . 6 164 C2C2-YABBY Transcription Factor family AT2G26580 73.62 1.80e-85 247.0
Tesi9g00520 . 6 163 C2C2-YABBY Transcription Factor family AT2G26580 67.683 1.42e-74 219.0
Tesi11g00923 . 53 149 C2C2-YABBY Transcription Factor family AT1G08465 61.224 2.63e-29 108.0
Tesi15g00450 . 22 162 C2C2-YABBY Transcription Factor family AT2G26580 73.103 2.23e-72 214.0
Tesi19g00468 . 6 163 C2C2-YABBY Transcription Factor family AT2G26580 70.122 3.78e-78 229.0
Tesi21g00605 . 15 205 C2C2-YABBY Transcription Factor family AT2G45190 66.146 9.97e-81 239.0
Tesi22g00339 . 15 229 C2C2-YABBY Transcription Factor family AT2G45190 63.063 2.69e-85 250.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Tesi YABBY 3.5e-70 CL0114 TF C2C2-YABBY