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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi22g00343 ATGAATACTTTTTCACATGTTCCCCCAGGTTTTCGATTCCACCCCACTGATGAAGAACTTGTTGATTACTACCTTAGAAAAAAAGTTGCTTCAAGAAGAATTGACCTAGATGTCATTAAAGATGTTGATCTCTATAAAATTGAACCATGGGATCTTCAAGAAAAGTGCAAAATAGGAACAGAAGAGCAGAATGAGTGGTATTTTTTTAGCCACAAAGATAAGAAGTATCCAACTGGAACTCGTACTAATAGAGCTACAACAGCAGGATTCTGGAAAGCAACTGGAAGAGATAAGGCTATTTACTCTAAGCATAACTTGATTGGCATGAGAAAGACTTTAGTATTTTATAAAGGTCGAGCCCCAAATGGACAAAAATCAGATTGGATTATGCATGAGTATCGGCTTGAAACAAATGAAAATGGAACTCCTCAGGCAATGAATTTAGTTAGAGCGACAAGTAATGTGATTTTTGTTGGATTGCATCAGGAAGAAGGTTGGGTGGTGTGTAGAGTGTTCAAGAAGCGATTAGCGACAATGCAGAAAGTAAGTGAGCACGAGTCACCATGTTGGTACGACGACCAGGTCTCATTCATGCCGGAGCTGGACTCTCCGAAGAGAATTACTCAGCCAGATATGGCATACCACCACCCTTATTCCTGCAAGCAAGAACTCGGATTGCAGTACCAAATGTCTCATGACCCCTTCATCCAGCTCCCTCATTTAGAGAGCCCCAAACTTCCACAGCCAACAGCCAGTGCAAGCTGCAACTCTGTGGCCGCATATGGTATTGATATGAACCAGAACCATGGAAGCACTTTGCAGTCCTCATCACTAACACAAGAAGAACAGATGCAACAAGGCCATCCATACAATTTGAACTCTCTTTACAGTAACAACAACAACAATGAGCAAGCAGTTGATCAAGTGACGGATTGGCGAGTTCTTGACAAGTTTGTTGCTTCTCAACTCAGCCAAGAGGATGTTTCCAAAGAAACCAACTACTCCAATGCCTCCAACATCTTTCACGTTGCCGACCACATGAACATCCTTGTCCGGCAATCCAACAAGCAAGAAGTGTCGACGCAGGAATACGCCTCAACATCCACCTCCAGTTGCCAGATTGATCTGTGGAAATGA 1137 42.66 MNTFSHVPPGFRFHPTDEELVDYYLRKKVASRRIDLDVIKDVDLYKIEPWDLQEKCKIGTEEQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYSKHNLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTPQAMNLVRATSNVIFVGLHQEEGWVVCRVFKKRLATMQKVSEHESPCWYDDQVSFMPELDSPKRITQPDMAYHHPYSCKQELGLQYQMSHDPFIQLPHLESPKLPQPTASASCNSVAAYGIDMNQNHGSTLQSSSLTQEEQMQQGHPYNLNSLYSNNNNNEQAVDQVTDWRVLDKFVASQLSQEDVSKETNYSNASNIFHVADHMNILVRQSNKQEVSTQEYASTSTSSCQIDLWK 378
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi22g00343 378 ProSiteProfiles NAC domain profile. 7 174 IPR003441 GO:0003677(InterPro)|GO:0006355(InterPro)
Tesi22g00343 378 SUPERFAMILY NAC domain 5 174 IPR036093 GO:0003677(InterPro)|GO:0006355(InterPro)
Tesi22g00343 378 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 307 - -
Tesi22g00343 378 FunFam NAC domain-containing protein 16 178 - -
Tesi22g00343 378 Gene3D NAC domain 16 177 IPR036093 GO:0003677(InterPro)|GO:0006355(InterPro)
Tesi22g00343 378 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677(InterPro)|GO:0006355(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi22g00343 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr22:22532529 Tesi2g02036 Tesi-Chr2:47676600 dispersed
Tesi Tesi-Chr5:46091185 Tesi22g00343 Tesi-Chr22:22532529 transposed
Tesi Tesi-Chr1:22046256 Tesi22g00343 Tesi-Chr22:22532529 wgd
Tesi Tesi-Chr21:12256558 Tesi22g00343 Tesi-Chr22:22532529 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tesi1g00001 . 18 540 NAC Transcription Factor family AT1G33060 43.063 8.05e-130 397.0
Tesi1g00017 . 6 344 NAC Transcription Factor family AT2G46770 49.34 1.30e-109 322.0
Tesi1g00480 . 1 243 NAC Transcription Factor family AT4G17980 57.194 3.28e-100 295.0
Tesi1g00501 . 1 243 NAC Transcription Factor family AT4G17980 56.835 4.57e-99 292.0
Tesi1g00585 . 1 274 NAC Transcription Factor family AT1G54330 56.61 5.95e-98 290.0
Tesi1g00690 . 12 275 NAC Transcription Factor family AT2G43000 55.197 1.82e-95 282.0
Tesi1g00963 . 1 395 NAC Transcription Factor family AT1G12260 59.0 5.26e-152 431.0
Tesi1g01343 . 2 364 NAC Transcription Factor family AT2G46770 49.882 5.71e-123 358.0
Tesi1g01371 . 17 508 NAC Transcription Factor family AT1G33060 36.29 5.34e-101 322.0
Tesi1g01770 . 1 226 NAC Transcription Factor family AT4G28500 75.877 3.44e-126 360.0
Tesi1g01782 . 5 375 NAC Transcription Factor family AT5G53950 43.692 1.15e-94 286.0
Tesi1g01883 . 1 309 NAC Transcription Factor family AT3G15500 52.722 9.71e-109 318.0
Tesi2g00258 . 7 132 NAC Transcription Factor family AT1G69490 34.014 2.01e-19 84.3
Tesi2g00500 . 4 274 NAC Transcription Factor family AT2G17040 58.781 6.53e-111 319.0
Tesi2g00659 . 1 146 NAC Transcription Factor family AT2G18060 91.781 4.49e-94 296.0
Tesi2g00755 . 106 497 NAC Transcription Factor family AT4G37130 58.105 1.69e-149 432.0
Tesi2g00907 . 11 153 NAC Transcription Factor family AT3G04070 44.138 1.36e-29 114.0
Tesi2g01147 . 2 186 NAC Transcription Factor family AT1G61110 48.663 7.10e-52 175.0
Tesi2g01290 . 1 229 NAC Transcription Factor family AT4G28500 71.304 2.23e-119 345.0
Tesi2g01360 . 1 258 NAC Transcription Factor family AT3G15500 63.953 3.29e-107 314.0
Tesi2g01362 . 1 363 NAC Transcription Factor family AT3G15510 52.446 2.30e-113 332.0
Tesi2g01730 . 18 548 NAC Transcription Factor family AT1G34190 44.154 2.49e-141 419.0
Tesi2g01862 . 1 340 NAC Transcription Factor family AT5G09330 43.681 4.38e-89 280.0
Tesi2g01883 . 15 182 NAC Transcription Factor family AT1G61110 44.118 3.34e-46 153.0
Tesi2g01925 . 1 289 NAC Transcription Factor family AT1G01720 71.382 6.88e-150 419.0
Tesi2g02036 . 5 323 NAC Transcription Factor family AT1G71930 51.734 5.58e-109 318.0
Tesi2g02164 . 3 527 NAC Transcription Factor family AT3G56570 54.144 0.0 525.0
Tesi2g02195 . 4 341 NAC Transcription Factor family AT4G10350 60.647 6.52e-149 422.0
Tesi2g02197 . 4 341 NAC Transcription Factor family AT4G10350 60.377 2.91e-148 420.0
Tesi3g00088 . 10 275 NAC Transcription Factor family AT2G43000 53.333 4.63e-95 280.0
Tesi3g00214 . 1 256 NAC Transcription Factor family AT1G56010 54.864 2.15e-86 258.0
Tesi3g00638 . 13 185 NAC Transcription Factor family AT1G61110 60.622 5.97e-75 231.0
Tesi3g00640 . 1 238 NAC Transcription Factor family AT4G28500 73.029 4.50e-126 363.0
Tesi3g00659 . 6 375 NAC Transcription Factor family AT5G53950 52.52 3.35e-110 324.0
Tesi3g00776 . 6 316 NAC Transcription Factor family AT1G52890 56.25 9.43e-113 328.0
Tesi3g00777 . 6 323 NAC Transcription Factor family AT1G61110 52.247 9.30e-114 332.0
Tesi3g01038 . 11 174 NAC Transcription Factor family AT1G77450 45.251 1.18e-35 132.0
Tesi4g00330 . 33 260 NAC Transcription Factor family AT5G56620 51.754 9.64e-65 221.0
Tesi4g00724 . 1 491 NAC Transcription Factor family AT1G65910 47.655 1.02e-136 413.0
Tesi4g01023 . 1 314 NAC Transcription Factor family AT3G18400 58.055 6.61e-119 344.0
Tesi4g01071 . 193 246 NAC Transcription Factor family AT1G28470 59.259 2.34e-15 73.2
Tesi4g01309 . 8 208 NAC Transcription Factor family AT5G39820 67.662 4.82e-100 299.0
Tesi4g01339 . 1 336 NAC Transcription Factor family AT5G61430 60.822 1.65e-152 431.0
Tesi4g01385 . 1 86 NAC Transcription Factor family AT1G56010 81.395 4.41e-49 159.0
Tesi4g01403 . 48 199 NAC Transcription Factor family AT5G63790 41.026 4.90e-24 97.4
Tesi4g01527 . 36 221 NAC Transcription Factor family AT4G28500 56.15 1.41e-69 219.0
Tesi5g00001 . 50 225 NAC Transcription Factor family AT2G02450 85.227 5.92e-109 322.0
Tesi5g00063 . 9 194 NAC Transcription Factor family AT3G04070 55.615 1.27e-60 201.0
Tesi5g00077 . 1 289 NAC Transcription Factor family AT1G01720 65.32 2.66e-132 375.0
Tesi5g00139 . 22 91 NAC Transcription Factor family AT1G61110 49.296 5.64e-12 65.1
Tesi5g00461 . 5 299 NAC Transcription Factor family AT1G32770 51.974 1.71e-93 282.0
Tesi5g00462 . 6 296 NAC Transcription Factor family AT2G46770 51.17 3.12e-105 311.0
Tesi5g00670 . 1 166 NAC Transcription Factor family AT1G69490 35.484 6.23e-22 91.3
Tesi5g00891 . 4 146 NAC Transcription Factor family AT2G18060 92.308 1.31e-92 290.0
Tesi5g00892 . 147 364 NAC Transcription Factor family AT2G18060 43.498 4.96e-48 159.0
Tesi5g01109 . 7 326 NAC Transcription Factor family AT1G76420 48.199 1.02e-101 301.0
Tesi6g00003 . 50 379 NAC Transcription Factor family AT2G02450 55.46 1.64e-114 334.0
Tesi6g00215 . 5 288 NAC Transcription Factor family AT1G71930 50.0 7.12e-97 286.0
Tesi6g00338 . 4 185 NAC Transcription Factor family AT1G61110 42.391 1.27e-47 156.0
Tesi6g00339 . 4 185 NAC Transcription Factor family AT1G61110 42.391 4.84e-48 157.0
Tesi6g00499 . 18 526 NAC Transcription Factor family AT1G34190 44.505 6.21e-127 382.0
Tesi6g00690 . 2 290 NAC Transcription Factor family AT2G46770 50.146 2.47e-107 317.0
Tesi6g00691 . 6 290 NAC Transcription Factor family AT2G46770 53.871 1.97e-108 319.0
Tesi6g00692 . 2 360 NAC Transcription Factor family AT2G46770 48.649 1.54e-108 322.0
Tesi6g00694 . 2 343 NAC Transcription Factor family AT2G46770 43.455 1.62e-84 259.0
Tesi6g00695 . 6 343 NAC Transcription Factor family AT2G46770 46.457 4.03e-100 299.0
Tesi6g00993 . 4 166 NAC Transcription Factor family AT1G65910 34.254 5.70e-23 97.8
Tesi6g01166 . 2 176 NAC Transcription Factor family AT3G17730 32.0 6.19e-18 80.9
Tesi6g01191 . 167 331 NAC Transcription Factor family AT5G61430 37.368 3.25e-24 102.0
Tesi6g01585 . 2 326 NAC Transcription Factor family AT1G76420 48.378 1.29e-109 322.0
Tesi7g00583 . 4 166 NAC Transcription Factor family AT1G69490 64.118 5.33e-73 226.0
Tesi7g00699 . 4 195 NAC Transcription Factor family AT5G04410 73.057 4.47e-100 303.0
Tesi7g00700 . 337 549 NAC Transcription Factor family AT3G10500 35.366 9.63e-26 107.0
Tesi7g00881 . 3 180 NAC Transcription Factor family AT5G22380 62.921 8.56e-80 238.0
Tesi7g00882 . 8 234 NAC Transcription Factor family AT5G22380 53.279 4.54e-87 256.0
Tesi7g00883 . 3 234 NAC Transcription Factor family AT5G22380 44.13 1.81e-61 190.0
Tesi7g00884 . 132 234 NAC Transcription Factor family AT5G22380 38.017 5.27e-14 63.9
Tesi7g00885 . 3 234 NAC Transcription Factor family AT5G22380 55.02 1.61e-86 255.0
Tesi7g01341 . 16 177 NAC Transcription Factor family AT1G61110 47.239 2.03e-48 165.0
Tesi7g01342 . 16 181 NAC Transcription Factor family AT1G61110 39.881 1.62e-35 128.0
Tesi10g00192 . 1 563 NAC Transcription Factor family AT1G65910 45.12 1.00e-153 457.0
Tesi10g00492 . 1 263 NAC Transcription Factor family AT3G18400 58.427 1.21e-98 289.0
Tesi10g00533 . 25 246 NAC Transcription Factor family AT1G28470 51.802 8.82e-73 228.0
Tesi10g00836 . 16 391 NAC Transcription Factor family AT1G26870 45.545 2.76e-94 287.0
Tesi10g00872 . 1 336 NAC Transcription Factor family AT5G61430 60.278 6.91e-144 409.0
Tesi10g00943 . 66 149 NAC Transcription Factor family AT2G46770 36.047 5.09e-13 65.9
Tesi10g01150 . 36 221 NAC Transcription Factor family AT4G28500 57.754 8.28e-71 223.0
Tesi10g01385 . 4 251 NAC Transcription Factor family AT5G13180 57.252 5.18e-89 262.0
Tesi11g00853 . 3 234 NAC Transcription Factor family AT5G22380 54.286 5.74e-91 266.0
Tesi11g00872 . 1 173 NAC Transcription Factor family AT2G27300 61.85 4.70e-78 245.0
Tesi11g01289 . 10 160 NAC Transcription Factor family AT1G77450 50.625 5.32e-42 150.0
Tesi11g01290 . 9 207 NAC Transcription Factor family AT1G69490 35.686 1.27e-36 133.0
Tesi11g01291 . 10 192 NAC Transcription Factor family AT1G69490 44.66 3.26e-50 167.0
Tesi11g01545 . 2 223 NAC Transcription Factor family AT5G18270 68.75 2.25e-103 309.0
Tesi11g01546 . 4 358 NAC Transcription Factor family AT3G04070 48.294 1.03e-98 302.0
Tesi12g00006 . 2 274 NAC Transcription Factor family AT5G08790 44.648 1.09e-80 245.0
Tesi12g00008 . 5 358 NAC Transcription Factor family AT3G04070 50.136 1.34e-98 294.0
Tesi12g00009 . 7 214 NAC Transcription Factor family AT5G18270 73.684 3.43e-108 320.0
Tesi12g00436 . 3 234 NAC Transcription Factor family AT5G22380 57.959 2.21e-92 270.0
Tesi12g00825 . 1 449 NAC Transcription Factor family AT3G57150 79.355 0.0 733.0
Tesi13g00424 . 56 161 NAC Transcription Factor family AT1G69490 72.222 1.75e-51 167.0
Tesi13g00634 . 8 234 NAC Transcription Factor family AT5G22380 55.649 6.34e-90 263.0
Tesi13g00635 . 54 147 NAC Transcription Factor family AT3G44350 74.227 3.80e-46 150.0
Tesi13g00636 . 8 234 NAC Transcription Factor family AT5G22380 53.782 5.87e-83 246.0
Tesi13g00637 . 8 234 NAC Transcription Factor family AT5G22380 55.602 7.75e-86 253.0
Tesi13g00638 . 147 234 NAC Transcription Factor family AT5G22380 30.769 7.92e-07 43.5
Tesi13g00639 . 55 234 NAC Transcription Factor family AT5G22380 48.98 4.65e-58 181.0
Tesi13g00741 . 7 158 NAC Transcription Factor family AT1G69490 40.462 4.91e-28 105.0
Tesi13g00742 . 14 162 NAC Transcription Factor family AT2G33480 37.634 2.30e-26 100.0
Tesi13g00743 . 14 162 NAC Transcription Factor family AT2G33480 38.172 8.78e-27 102.0
Tesi13g00744 . 14 162 NAC Transcription Factor family AT2G33480 37.634 2.18e-26 100.0
Tesi13g00745 . 14 162 NAC Transcription Factor family AT2G33480 37.634 2.18e-26 100.0
Tesi13g00984 . 11 160 NAC Transcription Factor family AT1G77450 45.946 4.84e-42 149.0
Tesi13g00985 . 11 136 NAC Transcription Factor family AT1G77450 54.198 3.41e-41 145.0
Tesi13g00989 . 10 160 NAC Transcription Factor family AT1G77450 51.282 2.73e-44 154.0
Tesi13g01037 . 102 231 NAC Transcription Factor family AT5G63790 48.344 2.27e-33 124.0
Tesi13g01041 . 8 206 NAC Transcription Factor family AT1G69490 38.5 9.65e-37 132.0
Tesi13g01042 . 8 124 NAC Transcription Factor family AT5G39820 45.0 7.08e-27 109.0
Tesi13g01043 . 11 136 NAC Transcription Factor family AT1G77450 54.615 9.40e-42 146.0
Tesi13g01044 . 8 173 NAC Transcription Factor family AT1G69490 46.784 5.64e-41 144.0
Tesi13g01055 . 3 136 NAC Transcription Factor family AT1G77450 53.191 4.99e-42 149.0
Tesi13g01060 . 10 215 NAC Transcription Factor family AT1G77450 46.781 2.14e-56 187.0
Tesi13g01061 . 10 215 NAC Transcription Factor family AT1G77450 44.538 5.48e-52 176.0
Tesi14g00392 . 2 328 NAC Transcription Factor family AT2G46770 45.918 3.32e-95 287.0
Tesi14g00553 . 73 174 NAC Transcription Factor family AT4G28530 77.451 1.45e-56 182.0
Tesi15g00042 . 12 316 NAC Transcription Factor family AT2G24430 58.006 1.69e-114 332.0
Tesi15g00710 . 4 338 NAC Transcription Factor family AT5G56620 58.611 1.01e-125 367.0
Tesi16g00457 . 1 178 NAC Transcription Factor family AT4G28530 64.045 2.91e-81 247.0
Tesi17g00010 . 9 371 NAC Transcription Factor family AT1G79580 53.476 7.75e-118 344.0
Tesi17g00123 . 10 275 NAC Transcription Factor family AT2G43000 53.901 5.29e-95 280.0
Tesi17g00392 . 7 158 NAC Transcription Factor family AT1G69490 38.587 6.10e-26 99.8
Tesi17g00493 . 1 238 NAC Transcription Factor family AT4G28500 74.37 9.53e-128 363.0
Tesi18g00105 . 1 234 NAC Transcription Factor family AT3G17730 76.17 2.48e-130 366.0
Tesi18g00623 . 2 233 NAC Transcription Factor family AT1G69490 64.831 3.07e-108 315.0
Tesi18g00636 . 6 197 NAC Transcription Factor family AT3G56570 26.263 1.23e-07 52.4
Tesi18g00684 . 10 258 NAC Transcription Factor family AT1G26870 64.706 1.38e-106 319.0
Tesi18g00975 . 34 221 NAC Transcription Factor family AT4G28500 56.085 3.70e-69 218.0
Tesi18g00979 . 80 239 NAC Transcription Factor family AT3G57150 32.995 2.03e-20 92.8
Tesi18g01173 . 1 251 NAC Transcription Factor family AT5G13180 56.604 6.68e-93 272.0
Tesi19g00233 . 4 317 NAC Transcription Factor family AT5G56620 56.522 5.69e-116 341.0
Tesi19g00623 . 2 146 NAC Transcription Factor family AT3G04070 36.0 1.37e-19 82.8
Tesi19g00624 . 10 167 NAC Transcription Factor family AT1G77450 43.636 7.93e-36 128.0
Tesi20g00672 . 74 174 NAC Transcription Factor family AT4G28530 75.248 1.88e-54 177.0
Tesi21g00018 . 16 163 NAC Transcription Factor family AT1G33060 66.883 1.18e-70 222.0
Tesi21g00019 . 1 341 NAC Transcription Factor family AT4G35580 44.591 5.99e-86 272.0
Tesi21g00058 . 6 343 NAC Transcription Factor family AT2G46770 52.764 5.19e-120 350.0
Tesi21g00603 . 1 395 NAC Transcription Factor family AT1G12260 56.171 8.00e-148 421.0
Tesi21g00807 . 1 243 NAC Transcription Factor family AT4G17980 58.955 1.37e-106 311.0
Tesi22g00343 . 1 395 NAC Transcription Factor family AT1G12260 56.872 2.36e-153 436.0
Tesi22g00875 . 6 364 NAC Transcription Factor family AT2G46770 49.099 1.07e-117 354.0
Tesi22g00910 . 1 411 NAC Transcription Factor family AT4G35580 42.659 3.45e-108 333.0
Tesi23g00456 . 8 275 NAC Transcription Factor family AT1G26870 60.357 4.85e-103 310.0
Tesi23g00496 . 193 257 NAC Transcription Factor family AT1G28470 54.545 1.55e-17 78.6
Tesi23g00720 . 1 336 NAC Transcription Factor family AT5G61430 60.388 1.05e-152 431.0
Tesi23g00721 . 1 225 NAC Transcription Factor family AT1G69490 67.111 2.92e-113 323.0
Tesi23g00871 . 1 241 NAC Transcription Factor family AT3G17730 74.793 2.12e-128 361.0
Tesi24g00140 . 1 285 NAC Transcription Factor family AT1G01720 68.027 5.33e-138 389.0
Tesi24g00203 . 1 340 NAC Transcription Factor family AT5G09330 42.35 2.43e-86 273.0
Tesi24g00321 . 18 548 NAC Transcription Factor family AT1G34190 45.017 3.03e-147 434.0
Tesi24g00581 . 125 261 NAC Transcription Factor family AT4G37130 56.204 5.59e-46 155.0
Tesi24g00661 . 3 156 NAC Transcription Factor family AT5G62380 35.882 4.81e-24 98.6
Tesi24g00825 . 4 274 NAC Transcription Factor family AT2G17040 58.423 9.11e-111 320.0
Tesi24g00958 . 2 146 NAC Transcription Factor family AT2G18060 91.724 6.33e-93 291.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Tesi NAM 1.6e-38 No_clan TF NAC