AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi22g00351 ATGGGGGCCGTAGTCGTTGGATCATCTTCCCGGAAGGCCATAGGCGCGAAGATCCATTCTCATCAAGCGATGGTGGAGCTCCTCAAATGGTGTTTTGAAGGAACAGTTCCGATCACGTTTTTGGTTGGGGCTCCATGGCATCTCTCTCTACCTGGGACACCTGCAACATTCCAGAGTATCAGGGACGTGTGTGGAGGGCTCATGGAGGTAGATCACAACACCTTATCCCATTCCGAACTTAGTGTTGCTCGTATTCGCCTTAAAGATTCCAATATGGTCGGAACACCTCATGTGATCAGACTCCCTGATCGGGGGGTTTTCTACTGGCTTATTATGGAAGTCCTTAGCGATGCCAACGACGTTGGAAACTCTGGGGATGCCATCATCCATGGGACCCCGTTCGCTGGCCATCTATCCCCGTCGCCGTTTCACAGTAGCATTGGCTCATTGCCAACTGAGGATGAAACCAACAGCTCGACTTTGCCTGCTTCGTTGCAATCCCTTGGGGGTCGATTTTGGGAGCATGATCGTGATGTCTCTGCTAATCTTGAGGTTGTCACCATCAATACGCATTCCCCAGTTAGTCTTGTGGTTGCATTGGGAGGGTTTACTCTACAGTATCAGTGCACTTCTGAGGTAGGCGCTTCCACTAGCTTAGTAGAGGATGATCAAGGGGTAGAGTTAGTTTGCGTGGAGGGCATCTCAGACAGAGGAGAAGAACCCTTCGTCCCATTGGGCCAAGGGCCACCAGTTTCGTGTTCTGCAACATATTCTACTCAAACTCTAGTTGTGGTGTCTTCACCTTCCCTTCCCGAGGTCGTGGCACTCGCCATTGGGCATCTCCCAGAGGCTAAGCACTCAGCAACAACGACAAATCAGGCGTGCCAAGGAGAAGTAGCGGTAGCCAGGGTCCAGAGTTTCACTCCATCATGTGTAGAATCGCCAGGCTCGGATTTGGTACCTATAAAGCCTGATTGTTTTGCGGAAGCAAGGATGGGCTCCGGTTTCAAGAGCCAAGGGTGCTTAGGAGTGCAAGGAACCATCTCAGATATCCTAGGTGTGCCTAGGGCTCTCCTTAAGAATAGGTCGTCCCTATTGTCAGGGCCTAGGGACTTGTCTCATCATCCTTTGAGGGGTGGGTTAGGAGAACTAGAAGGTGGGGTTGACAATGGGAACCCAAAGGAGACTTCGGCCTGGGTCCTATCCAAAATGGCCGATTTCGGTGCATTTGTGGGCTTATCATATGAGGGTCATGAGTCGGAAGTGTTGGGCCTCTTCTGTTCTTTGGAACCTCAACGGAGTTCCTCGATAGCCAATACCACTACGGGTGTGACGGAGTTGAGTAACAAACGGATTGAGAAGGAGCTTAGACGCTTATCCTCCTCCATTCAATCTCCTCATCCCAGTAATCCGCTTCGGAGTGTGGCTCAGAAGGCACGAGGTGTTTTTGTGGATCATAAGATATGCTTCCTTCATGTTTTTTTGAACAAAAACTCCTCTTTGATCATGCACAGGACGTTAAAGCCGTATCCCATTTCAGCTCACCGTATAGTACCTGCTCACATTGACCAACCGGACTGGGCGATTGATGGAATCCCGAAAATTGAACCCAATAGTGAGCTGCAGAATATTGTGGAGATCAAAACTCCAGAGCTGATTGAGAGAATGAGAGAAACTTGTCGATATTGCAACAGTTCTTCAGGGGAGGATGAAGGGTTGAAACCGCTTGAAAAGACGCGTTGGAAAGAGGTGCTAGAATGGTTTAAAAGGAGGATCAAGATTGCCAGGGTGGTTTTGGATGCAGCTGCTCGTGTAATTCGACCCGGTGTGACAACTGATGAAATTGATGAAGTGGTCCATAAGGCAACGATTGATGCTGGAGGGTATCCATCTCCACTAAATTATAATTACTTTCCAAAGTCTTGCTGCACGTCAGTTAATGAAGTCATCTGCCATGGAATTCCAGATGGCAGGAGATTAGAGGATGGTGACATTGTAAATGTTGATGTGACTGTGTACTATAAAGGTGTCCATGGTGATCTTAACGAAACATACTTTGTGGGGAAAGTTGATGAAGCATCTCAACAGCTGGTCCAATGTACTTATGAATGCTTGGAGAAAGCAATATCCATAGGTGCATTCACTACCTCAGCAGATCCTCCTCCTCCTGCATCAGCAAGCATCTGCACCCCCCAGTCCACCGCCATTAAACCTGGAGTACGATTTCGTGAAGTTGGGGAGGTCATCAATCGACATGCTTCAATGATGGGGTTCTCTGTGGTGAAATCAATCTGTGGTCATGGAATTGGAGAGCTTTTTCACTGCGCCCCAAATATTCCACATTATGGAAGAAATAAAGCAGTTGGTGTGATGAAAGTAGGGCAGACCTTTACAATTGAACCAATGATCAATGCCGGAGTTTGGCATGATCGGATGTGGCCTGATGGATGGACAGCTGTTACTGCAGATGGCAAACGCAGTGCTCAGTTTGAACACACTCTTCTGGTGACGGCGACTGGAGTCGAGGTTCTTACAGCACGGTTGCCTTCCTCACCCAATATGTACCCTTGGTTAAATGTTTAA 2583 48.39 MGAVVVGSSSRKAIGAKIHSHQAMVELLKWCFEGTVPITFLVGAPWHLSLPGTPATFQSIRDVCGGLMEVDHNTLSHSELSVARIRLKDSNMVGTPHVIRLPDRGVFYWLIMEVLSDANDVGNSGDAIIHGTPFAGHLSPSPFHSSIGSLPTEDETNSSTLPASLQSLGGRFWEHDRDVSANLEVVTINTHSPVSLVVALGGFTLQYQCTSEVGASTSLVEDDQGVELVCVEGISDRGEEPFVPLGQGPPVSCSATYSTQTLVVVSSPSLPEVVALAIGHLPEAKHSATTTNQACQGEVAVARVQSFTPSCVESPGSDLVPIKPDCFAEARMGSGFKSQGCLGVQGTISDILGVPRALLKNRSSLLSGPRDLSHHPLRGGLGELEGGVDNGNPKETSAWVLSKMADFGAFVGLSYEGHESEVLGLFCSLEPQRSSSIANTTTGVTELSNKRIEKELRRLSSSIQSPHPSNPLRSVAQKARGVFVDHKICFLHVFLNKNSSLIMHRTLKPYPISAHRIVPAHIDQPDWAIDGIPKIEPNSELQNIVEIKTPELIERMRETCRYCNSSSGEDEGLKPLEKTRWKEVLEWFKRRIKIARVVLDAAARVIRPGVTTDEIDEVVHKATIDAGGYPSPLNYNYFPKSCCTSVNEVICHGIPDGRRLEDGDIVNVDVTVYYKGVHGDLNETYFVGKVDEASQQLVQCTYECLEKAISIGAFTTSADPPPPASASICTPQSTAIKPGVRFREVGEVINRHASMMGFSVVKSICGHGIGELFHCAPNIPHYGRNKAVGVMKVGQTFTIEPMINAGVWHDRMWPDGWTAVTADGKRSAQFEHTLLVTATGVEVLTARLPSSPNMYPWLNV 860
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi22g00351 860 Gene3D Creatinase-methionine aminopeptidase superfamily 504 856 IPR036005 -
Tesi22g00351 860 SUPERFAMILY Creatinase-aminopeptidase 583 845 IPR036005 -
Tesi22g00351 860 PANTHER METHIONINE AMINOPEPTIDASE 497 562 - GO:0005829(PANTHER)|GO:0035551(PANTHER)|GO:0070006(PANTHER)
Tesi22g00351 860 Hamap Methionine aminopeptidase [map]. 577 847 IPR002467 GO:0006508(InterPro)|GO:0070006(InterPro)
Tesi22g00351 860 CDD MetAP1 593 845 IPR002467 GO:0006508(InterPro)|GO:0070006(InterPro)
Tesi22g00351 860 PRINTS Methionine aminopeptidase-1 signature 642 655 IPR001714 -
Tesi22g00351 860 PRINTS Methionine aminopeptidase-1 signature 664 680 IPR001714 -
Tesi22g00351 860 Pfam Metallopeptidase family M24 589 710 IPR000994 -
Tesi22g00351 860 Pfam Metallopeptidase family M24 735 838 IPR000994 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi22g00351 K01265 methionyl aminopeptidase [EC:3.4.11.18]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr18:16590324 Tesi22g00351 Tesi-Chr22:22741800 dispersed
Tesi Tesi-Chr22:22741800 Tesi2g00210 Tesi-Chr2:4585587 dispersed
Tesi Tesi-Chr22:22658548 Tesi22g00351 Tesi-Chr22:22741800 proximal