AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi7g01018 ATGTTTGAGATCAAAGATCCGGCCATTAAGCTCTTCGGGAGGACGATTCCGTTGCTGGAAACTCAGATTCCGGCGGAGTCTGGAGAGAAATCCGATCCGGAATGTCAGATTCTTTCGGATTCTGAAGTGATGGATGCATGCAGTGAAACAACAAAGATATATGTTGAGGATCCTCCTGCGGAAGAGTCCGGTGAACCAGTTAAGTCCTCCGTTTTAGACGAGGGTAAGGAAGACAATGATCAAACTCCTACTCAGGAGAATAAGACAACACTAGATTCTAAACCTGAGGAAGATCAGGCTGAAACTGATGTGGCTGGCCAAGAGAAGGTTCTCAAGAAGCCAGACAAGATCCTCCCATGTCCTCGCTGCAACAGTTTAGACACAAAGTTTTGCTACTACAATAATTACAATGTCAATCAGCCTAGGCACTTCTGTAAGAACTGCCAGAGATATTGGACAGCCGGGGGGACAATGAGAAATGTTCCAGTAGGCGCCGGACGGCGGAAGAATAAGCATTCAGCCTTGCAGTATCGTCACGTAGTGGTATCCTCTGACGGGATACCAACCACTGAGGTTGATACTCCGGACTCATCCACTCACCAAGTTCTCTCTTGCGGGGGACTTTCGACCTCTTCAAGGCCTTTAAATGGAAATGGGACAGTCCTAAAATTTGGGCCTGATGTGCCTCTTTGTGAATCCATGGATGCCGTGGTAAATTTCGGAGACCAGAAGAGAAGCATTGAGATGGATTCTGTGGCTTGTGGAGAAAATGGAGTGAAGCCCTCATCATGCGATTCTTCCTTGACAGCCTCTACTTGCCAGGAAAATGAGTTGCCTAAGAATGTGGTTCAAGTGGAGCAAAGTGGGATTCTGGGATGTTACAACGGGCTTACTCCTCCTCCAACACATCCTCTGCAGTGTTACCCTGGTCCTCCATTGGCTTACCCTTGGAACCCTTGTTGGAATCCTGTAGCTGCCATGGCCGCAGGTCGTTGCTCTTCTGAACTGGTTTATGGACCAGATGGCAGTAATTCCAATCCGGTTCAATGGGGTTCCCCACCAATGGTGGCCGTTCCTGGGTTCTGCACTCCGAGCACCCCTTTTCCATTTGTGCCTGCCTCCTATTGGGGTTGCATGCCAGGCTGGGCTGCCAGACCATGGAATGTGCCATGGGTTGGATCTAATGGAAATCTATCCCCACAGTCCTCTGCTAGCAACAGTGGCTGTTCAGGCAGTGGCTCTCCAACCTTAGGCAAGCATTCCAGAGATGCAAATTTACAGGTGGAAGAGAAACAGGAAAAGTGTATCTGGGTTCCCAAGACACTGAGAATTGATGACCCAGAAGAGGCCGCAAAGAGTTCTATCTGGGATACCTTAGGTATTAGGCCTGATCAGAATGAACCCATAACAAAAGGTGCTGGTGTTTTTAAAGCTTTTCAACCCAAAACAGTAGGCAAGGGCCATGTATCTGATGCCTCCCAGGTTTTACAAGCTAACCCGGCAGCTCTTTCTCGGTCCCAATCATTCCAGGAGGGCACATAG 1542 48.83 MFEIKDPAIKLFGRTIPLLETQIPAESGEKSDPECQILSDSEVMDACSETTKIYVEDPPAEESGEPVKSSVLDEGKEDNDQTPTQENKTTLDSKPEEDQAETDVAGQEKVLKKPDKILPCPRCNSLDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHSALQYRHVVVSSDGIPTTEVDTPDSSTHQVLSCGGLSTSSRPLNGNGTVLKFGPDVPLCESMDAVVNFGDQKRSIEMDSVACGENGVKPSSCDSSLTASTCQENELPKNVVQVEQSGILGCYNGLTPPPTHPLQCYPGPPLAYPWNPCWNPVAAMAAGRCSSELVYGPDGSNSNPVQWGSPPMVAVPGFCTPSTPFPFVPASYWGCMPGWAARPWNVPWVGSNGNLSPQSSASNSGCSGSGSPTLGKHSRDANLQVEEKQEKCIWVPKTLRIDDPEEAAKSSIWDTLGIRPDQNEPITKGAGVFKAFQPKTVGKGHVSDASQVLQANPAALSRSQSFQEGT 513
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi7g01018 513 PANTHER CYCLIC DOF FACTOR 2 1 512 IPR045174 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)
Tesi7g01018 513 ProSiteProfiles Zinc finger Dof-type profile. 118 172 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Tesi7g01018 513 Pfam Dof domain, zinc finger 116 172 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Tesi7g01018 513 MobiDBLite consensus disorder prediction 52 110 - -
Tesi7g01018 513 ProSitePatterns Zinc finger Dof-type signature. 120 156 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Tesi7g01018 513 MobiDBLite consensus disorder prediction 399 423 - -
Tesi7g01018 513 MobiDBLite consensus disorder prediction 90 110 - -
Tesi7g01018 513 MobiDBLite consensus disorder prediction 399 421 - -
Tesi7g01018 513 MobiDBLite consensus disorder prediction 55 83 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi7g01018 K16222 Dof zinc finger protein DOF5.5
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr10:34533368 Tesi7g01018 Tesi-Chr7:23227488 dispersed
Tesi Tesi-Chr18:25458978 Tesi7g01018 Tesi-Chr7:23227488 dispersed
Tesi Tesi-Chr3:44430437 Tesi7g01018 Tesi-Chr7:23227488 dispersed
Tesi Tesi-Chr4:50064315 Tesi7g01018 Tesi-Chr7:23227488 dispersed
Tesi Tesi-Chr7:23227488 Tesi9g00861 Tesi-Chr9:41683730 dispersed
Tesi Tesi-Chr11:22318672 Tesi7g01018 Tesi-Chr7:23227488 wgd
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tesi1g00039 . 65 296 C2C2-Dof Transcription Factor family AT3G61850 37.722 1.25e-31 117.0
Tesi1g01305 . 63 296 C2C2-Dof Transcription Factor family AT3G61850 49.63 6.51e-68 210.0
Tesi1g01801 . 27 308 C2C2-Dof Transcription Factor family AT1G28310 36.508 4.29e-39 138.0
Tesi1g01865 . 20 132 C2C2-Dof Transcription Factor family AT1G51700 46.903 4.42e-31 113.0
Tesi2g01220 . 5 136 C2C2-Dof Transcription Factor family AT2G34140 51.471 1.21e-40 131.0
Tesi2g01305 . 27 311 C2C2-Dof Transcription Factor family AT1G28310 41.118 3.67e-43 149.0
Tesi2g01306 . 34 123 C2C2-Dof Transcription Factor family AT5G60850 63.333 6.81e-34 122.0
Tesi2g01508 . 6 316 C2C2-Dof Transcription Factor family AT5G65590 40.857 2.70e-64 204.0
Tesi3g00498 . 5 160 C2C2-Dof Transcription Factor family AT2G34140 53.75 5.09e-53 164.0
Tesi3g00673 . 27 311 C2C2-Dof Transcription Factor family AT1G28310 43.092 2.68e-47 160.0
Tesi3g00674 . 31 110 C2C2-Dof Transcription Factor family AT5G60200 66.25 3.16e-33 120.0
Tesi4g01327 . 3 457 C2C2-Dof Transcription Factor family AT5G39660 43.75 7.31e-117 350.0
Tesi4g01457 . 48 116 C2C2-Dof Transcription Factor family AT5G60850 82.609 4.77e-36 130.0
Tesi5g00493 . 6 316 C2C2-Dof Transcription Factor family AT5G65590 40.634 1.11e-58 189.0
Tesi5g00732 . 44 126 C2C2-Dof Transcription Factor family AT5G60850 65.06 3.70e-35 126.0
Tesi5g00739 . 1 181 C2C2-Dof Transcription Factor family AT5G66940 41.935 1.75e-35 121.0
Tesi6g00390 . 18 117 C2C2-Dof Transcription Factor family AT3G52440 54.167 2.64e-36 129.0
Tesi6g00733 . 7 316 C2C2-Dof Transcription Factor family AT5G65590 38.504 4.05e-55 181.0
Tesi6g01109 . 1 118 C2C2-Dof Transcription Factor family AT5G66940 54.237 6.88e-38 127.0
Tesi6g01118 . 48 126 C2C2-Dof Transcription Factor family AT5G60850 67.089 5.77e-34 124.0
Tesi7g00315 . 46 288 C2C2-Dof Transcription Factor family AT2G28510 43.494 3.85e-48 164.0
Tesi7g00436 . 1 321 C2C2-Dof Transcription Factor family AT3G55370 42.077 4.90e-64 204.0
Tesi7g00931 . 13 247 C2C2-Dof Transcription Factor family AT3G52440 40.214 6.21e-44 147.0
Tesi7g01018 . 1 457 C2C2-Dof Transcription Factor family AT5G39660 36.429 2.50e-81 259.0
Tesi9g00184 . 55 116 C2C2-Dof Transcription Factor family AT1G51700 48.387 2.04e-13 66.2
Tesi9g00861 . 18 177 C2C2-Dof Transcription Factor family AT1G51700 54.545 1.75e-44 145.0
Tesi10g00854 . 3 457 C2C2-Dof Transcription Factor family AT5G39660 44.656 4.42e-110 332.0
Tesi10g01032 . 34 307 C2C2-Dof Transcription Factor family AT5G60850 40.753 9.33e-49 162.0
Tesi10g01062 . 1 372 C2C2-Dof Transcription Factor family AT5G62940 40.0 6.95e-54 178.0
Tesi11g00418 . 1 321 C2C2-Dof Transcription Factor family AT3G55370 43.094 1.05e-67 213.0
Tesi11g00553 . 46 288 C2C2-Dof Transcription Factor family AT2G28510 42.007 1.82e-49 163.0
Tesi11g00992 . 2 446 C2C2-Dof Transcription Factor family AT3G47500 36.932 1.41e-78 251.0
Tesi12g00685 . 13 209 C2C2-Dof Transcription Factor family AT3G45610 38.956 1.57e-41 140.0
Tesi12g00827 . 1 321 C2C2-Dof Transcription Factor family AT3G55370 42.192 9.91e-64 203.0
Tesi13g00227 . 46 288 C2C2-Dof Transcription Factor family AT2G28510 38.628 9.09e-44 150.0
Tesi17g00517 . 27 142 C2C2-Dof Transcription Factor family AT1G28310 60.684 6.28e-36 134.0
Tesi17g00572 . 42 113 C2C2-Dof Transcription Factor family AT5G60200 65.432 1.87e-29 116.0
Tesi18g00366 . 34 299 C2C2-Dof Transcription Factor family AT5G60850 40.283 2.82e-50 167.0
Tesi18g00611 . 101 457 C2C2-Dof Transcription Factor family AT5G39660 46.154 3.23e-100 307.0
Tesi18g00895 . 1 372 C2C2-Dof Transcription Factor family AT5G62940 40.741 8.21e-52 172.0
Tesi19g00198 . 18 158 C2C2-Dof Transcription Factor family AT1G51700 57.143 2.20e-44 145.0
Tesi21g00115 . 63 296 C2C2-Dof Transcription Factor family AT3G61850 50.0 1.05e-64 201.0
Tesi22g00824 . 63 288 C2C2-Dof Transcription Factor family AT3G61850 48.302 1.11e-63 202.0
Tesi23g00297 . 63 217 C2C2-Dof Transcription Factor family AT5G62940 50.968 3.07e-40 143.0
Tesi23g00553 . 34 109 C2C2-Dof Transcription Factor family AT5G60850 78.947 2.00e-39 134.0
Tesi24g00502 . 204 257 C2C2-Dof Transcription Factor family AT5G65590 53.731 1.83e-15 68.6
Tesi24g00503 . 78 145 C2C2-Dof Transcription Factor family AT2G37590 77.941 1.41e-36 127.0
Tesi24g00580 . 3 253 C2C2-Dof Transcription Factor family AT3G50410 46.215 2.72e-52 167.0
Tesi24g00583 . 9 94 C2C2-Dof Transcription Factor family AT5G65590 62.791 4.08e-33 122.0
leaf

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Tesi zf-Dof 3.9e-32 No_clan TF C2C2-Dof