AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi7g01084 ATGAGGACTTCAAGGATTCATATCAAGGAGGTTGAGAAAGTGGTTACAAATATTAGCGACAATGATGATGGCGATGATGACAACGATGATGGAGGGGATGTTAGGGGGACGTCAGATGGGCTGTCACATACACAATCAGAGGAGAGTCATGAGCAGGGGAGGCACGATATTGTATTTACAGAAGAACAATATTTCGACCGTGCCACCCAGGACACTAATATGTTGCGTGTATGCCCTATTGTGGTTATGGCTTATGAGAGCCAGACATACGAGCAACGGAGTCGTGGTATTGTGCGACAGGCTGGACGAGGCATTGATGACCTGATTTATAGGATGGATAGAAATACTAGGATAGGCAAAGGTGTTAGAGCTGGCGCAAAAGAATCAAAACCAATTTCCAATGAGCTTGCTTCTGCAATAAATGACGGCCTTTACTTTTATGAGCAGGAGTTGAGAGCTATGAGATCTAATAATAGAAGGAATAACCCAGGGCTAGACATTGGAGATGGTGAAGCTAGATCTTCCAACACTGTTCCTGGATTACCAAATTCAAAGATCAGTGTGAATTCTGCTGGAAGCAATGGCTACGAGGTGCCTGGCAATGCTAATTCCCAGAGGAAGCAAAATAAAGGTGTTAACAAACAATGGTCATCCCATAAGCAGCGCTTGTTTCCCAGCAATTTCAGAAACCATGGATATGGTCATAACCGTCATGGCATCATCGTATCAGAAAGTCCTCCAAGCAATTCAGTTGGGTTTTTCTTTGGGTCAACGCCTCCGGAAAGTCATAGTCCTATGTCTTCAAAACTGAGTGCTTCACCTCATGGGATCCTTTCTGGGAGTAGTCCACTGGTGGGTTCTATGCCAAAACCTTTTCCGCCATTTCAGCATCCAAGTCATCAGCTTCTAGAAGAAAGTGGTTTCAGGCAGCAGAAGTACCTGAAGTTCCACAAGCGTTGCATAAGTGACCGAAAGAGACTGGGAATCGGATGCAGCGAGGAAATGAATACCCTCTACCGGTTTTGGTCATTTTTCCTCCGAAGCATGTTCTTTCCTTCAATGTACAATGAATTCCGGAAATTAGCACTGGAAGATGCAGTTGCTAAGTATAATTATGGAGTAGAATGCCTTTTCAGGTTCTTTAGTTACGGGCTAGAGAAGCAATTCAGAGAAGATCTGTATGATGACTTTGAACAGCTCACTCTCGAATTCTACAATAAAGGCAATCTTTATGGCCTTGAAAAATACTGGGCCTTCCACCATTACCGGGAAGTACGTGACCAGAAAGCCCCTCTAAAGAAGCATCCAGAATTGGGTAGGTTGCTGAAGAAAGAATACCATAGCTTAGATGACTTCCGTACGAAAGAGAAGGCGATGAGACGGTAG 1386 44.16 MRTSRIHIKEVEKVVTNISDNDDGDDDNDDGGDVRGTSDGLSHTQSEESHEQGRHDIVFTEEQYFDRATQDTNMLRVCPIVVMAYESQTYEQRSRGIVRQAGRGIDDLIYRMDRNTRIGKGVRAGAKESKPISNELASAINDGLYFYEQELRAMRSNNRRNNPGLDIGDGEARSSNTVPGLPNSKISVNSAGSNGYEVPGNANSQRKQNKGVNKQWSSHKQRLFPSNFRNHGYGHNRHGIIVSESPPSNSVGFFFGSTPPESHSPMSSKLSASPHGILSGSSPLVGSMPKPFPPFQHPSHQLLEESGFRQQKYLKFHKRCISDRKRLGIGCSEEMNTLYRFWSFFLRSMFFPSMYNEFRKLALEDAVAKYNYGVECLFRFFSYGLEKQFREDLYDDFEQLTLEFYNKGNLYGLEKYWAFHHYREVRDQKAPLKKHPELGRLLKKEYHSLDDFRTKEKAMRR 461
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi7g01084 461 SMART dm15 307 348 IPR006607 GO:0000339(InterPro)|GO:0048255(InterPro)
Tesi7g01084 461 SMART dm15 388 423 IPR006607 GO:0000339(InterPro)|GO:0048255(InterPro)
Tesi7g01084 461 SMART dm15 349 387 IPR006607 GO:0000339(InterPro)|GO:0048255(InterPro)
Tesi7g01084 461 MobiDBLite consensus disorder prediction 157 219 - -
Tesi7g01084 461 MobiDBLite consensus disorder prediction 15 55 - -
Tesi7g01084 461 MobiDBLite consensus disorder prediction 176 219 - -
Tesi7g01084 461 Pfam LARP1 HEAT repeat region 297 447 IPR006607 GO:0000339(InterPro)|GO:0048255(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi7g01084 K18757 la-related protein 1
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr13:23604634 Tesi7g01084 Tesi-Chr7:28725003 dispersed
Tesi Tesi-Chr7:28725003 Tesi9g00503 Tesi-Chr9:34566647 transposed