AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi7g01261 ATGCAAGGAAAACCCAAGAGGAGAACAGTTACAGAGAATGGGGATGGGGCAGGTGACTTGGTCCTTGCCACTTCGATTGGGAATGGGGAGGATTTGGGTCCTATTGTCAGGCATGCGTTTGAAATGGGGAGGCCCGACGCTCTACTGCACCAGCTCAAAAATGTCATGAAGAAGAAGGAAGTTGAGATTGAAGAGCTCTGCAAGCTTCATTATGAGGAATTCATTCTTGCTGTTGATGAGCTCCGTGGTGTCTTGGTCGATGCTGAAGAGCTGAAGAGTGAGCTCTCAAGTGACAATTTCAGGCTTCAGGAGGTGGGGAGCTCTCTTCTGCTAAAACTTGAAGAGCTCCTTGAGTCATATTCTATCAAGAAGAATGTTACTGAGGCTATAAAAATGTCCAAGACCTGTGAGCAAGTCTTGGATCTGTGTGTGAAGTGTAACCAACACATATCTGAAGGTCAATTTTACCCTGCTTTAAAGACTCTGGACCTGATTGAGAGAAATTATCTGCACAATGTCCCTGTTAAGGCTCTCCGGAAGGTGATCGAGATGCGAATACCAGCAATAAAGTCACATATTGAGAAGAAAGTGTGCAGTGAGTTTAATGAGTGGCTGGTGCACATAAGGAGAACATCAAGAGATATTGGACAGATCGCTATAGGACAGGCGGCATCGGCCCGTCAGAGGGACGAGGAAATGAGGGCCCGCCAGCGGGAGGCCGAGGAACAGAGCCGTTCAGGGTTAGGAGATTGTGTGTATACCTTAGATGTCGATGAGATTGATGAAGATTCAGTTCTCAAGTTCGACCTTACTCCTGTATATCGGGCATACCACATCCACACTTGCCTTGAGATTCAAGATCAATTCCGTGAATACTACTATAAGAATCGGTTGTTACAGCTCAAATCGGACTTACAAATATCATCAATACAACCATTTCTTGAATCCCATCAAACATTCTTTGCTCAAATTGCAGGGTACTTCATCGTGGAGGACCGGGTCCTACGGACTGCAGGGGGACTGCTGTCAGCTAATCAGGTTGGGACGATATGGGAAACTGCTGTTGCAAAGATGACATCAGTGTTGGAGGAACAGTTTTCACGTATGGATATCGCAAGCCATCTACTCCTAATCAAGGACTATGTGACTCTTCTAGGCGCGACTCTTCGACGATATGGGTACCAAGTGGGACCCCTACTTGAGGTTCTTGACAATAGCACAGACAAATACCACGAGCTTCTTTTAGAAGAGTGTCGGCAGCAGATGGTCGATATCATTGCCCATGACAGTTATGAGCAGATGGTGATGAAAAAGGAGTACGAGTACACTATGAACGTTTTGTCATTCCATCTCCAGAGCTCAGATATAATGCCTGCCTTCCCATATATTGCACCCTTCTCCTCCACCGTACCTGATACCTGCCGCATCGTTCGATCATTCATTGGGGACTCTGTCAGTTACTTGTCTTATGGCGGCCGCATGAATTTCTATGATGTTGTGAAGAAGTACCTGGACAAGCTCTTGATTGATGTGTTAAATGAGGCTCTACTGAAAGCGATTCACAGTTGCAACACTGGTGTGTCTCAAGCAATGCAGATAGCTTCAAACATAACTGTTCTTGAGCGGGCTTGTGATTTATTTCTTCGACAGGCAGCCCAACACTGTGGGATCCCTATACGATCAGTTGAGAGGCCTCAAGCTAGTCTAACTGCTAAGGCGGTTCTAAAGACATCAAGGGATGCCTCCTATCTTGCTCTGTTGAACCTAGTGAACTCTAAGGTGGATGAGTTTATGGCACCGATGGGTGATATCAATTGGACGACGGAGGAGATCCCACAGAATGGGAATGAGTTTATACATGAGGTGGTGTTCTACCTCGACACCCTGATATCCACAGCTCAACAAATTTTACCTTTGGATGCCGTGTACAAGGTTGGGAGTGGGGCCCTCGAGCACGTTTCCAACTTGATTGTGGCAGCTCTTCTCAGTGACAGCGTGAAGAGGTTCAATGTGAATGCAATCATGGGCATTGACAATGATCTGAAGATGTTAGAGTCCTTTGCAGATGAGAGGTTCCACAGCACTGGATTGAGTGAGATACACATGGAAGGTAGTCTAAGAGACTGCTTGATAGAAGCTCGACAATTAACCAACCTTCTATTGAGCAACCAGCCAGAGAACTTCATGAATCCTGTGATACGGGAGAAACACTACAACACTTTGGACTATAAGAAGGTTGCCAGTATTTGTGAGAAATTTAAAGATTCCCCAGATAGGCTCTTTGGAAGCCTTTCAAGCCGGAATACGAAGCAAAATGCTCGAAAGAAGTCAATGGACATGTTGAAAAGAAGACTAAGGGATTTCAATTGA 2370 45.65 MQGKPKRRTVTENGDGAGDLVLATSIGNGEDLGPIVRHAFEMGRPDALLHQLKNVMKKKEVEIEELCKLHYEEFILAVDELRGVLVDAEELKSELSSDNFRLQEVGSSLLLKLEELLESYSIKKNVTEAIKMSKTCEQVLDLCVKCNQHISEGQFYPALKTLDLIERNYLHNVPVKALRKVIEMRIPAIKSHIEKKVCSEFNEWLVHIRRTSRDIGQIAIGQAASARQRDEEMRARQREAEEQSRSGLGDCVYTLDVDEIDEDSVLKFDLTPVYRAYHIHTCLEIQDQFREYYYKNRLLQLKSDLQISSIQPFLESHQTFFAQIAGYFIVEDRVLRTAGGLLSANQVGTIWETAVAKMTSVLEEQFSRMDIASHLLLIKDYVTLLGATLRRYGYQVGPLLEVLDNSTDKYHELLLEECRQQMVDIIAHDSYEQMVMKKEYEYTMNVLSFHLQSSDIMPAFPYIAPFSSTVPDTCRIVRSFIGDSVSYLSYGGRMNFYDVVKKYLDKLLIDVLNEALLKAIHSCNTGVSQAMQIASNITVLERACDLFLRQAAQHCGIPIRSVERPQASLTAKAVLKTSRDASYLALLNLVNSKVDEFMAPMGDINWTTEEIPQNGNEFIHEVVFYLDTLISTAQQILPLDAVYKVGSGALEHVSNLIVAALLSDSVKRFNVNAIMGIDNDLKMLESFADERFHSTGLSEIHMEGSLRDCLIEARQLTNLLLSNQPENFMNPVIREKHYNTLDYKKVASICEKFKDSPDRLFGSLSSRNTKQNARKKSMDMLKRRLRDFN 789
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi7g01261 789 Coils Coil 78 98 - -
Tesi7g01261 789 Coils Coil 223 243 - -
Tesi7g01261 789 Gene3D - 395 563 IPR042045 -
Tesi7g01261 789 FunFam Exocyst complex component 396 564 - -
Tesi7g01261 789 Pfam Exocyst complex subunit Sec15 C-terminal 398 752 IPR046361 -
Tesi7g01261 789 Pfam Exocyst complex component EXOC6-Sec15, N-terminal 51 220 IPR048359 -
Tesi7g01261 789 PANTHER SEC15 18 788 IPR007225 GO:0000145(PANTHER)|GO:0006886(InterPro)|GO:0006887(PANTHER)|GO:0006893(PANTHER)|GO:0016020(PANTHER)|GO:0090522(InterPro)
Tesi7g01261 789 FunFam Exocyst complex component 578 728 - -
Tesi7g01261 789 Gene3D Dsl1p vesicle tethering complex, Tip20p subunit, domain D 578 728 IPR042044 -
Tesi7g01261 789 Coils Coil 49 69 - -
Tesi7g01261 789 PIRSF Sec15 1 789 IPR007225 GO:0006886(InterPro)|GO:0090522(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi7g01261 K19985 exocyst complex component 6
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr16:36910341 Tesi7g01261 Tesi-Chr7:38942832 transposed
Tesi Tesi-Chr7:38695059 Tesi7g01261 Tesi-Chr7:38942832 transposed
Tesi Tesi-Chr11:30719181 Tesi7g01261 Tesi-Chr7:38942832 wgd