AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi13g00833 ATGGCGGCAGAGCAGCAGGTGCCGCTGTTGAAGAAGGTTTACTATCAGAATTGCTCAGGGTGTAGAGTGGAACAGCTTAAAGAGACCAGACGCGGTTTACCCATTAGGGAGCTTCTTTCTATATGGACTGTGGTGCTATGCACTGCATTGCCGATATCATCTCTCTTTCCATTCCTTTATTTCATGATTAGGGACTTCCATATAGCAAAAAGGGAGGAAGACATTGGTTACTATGCTGGTTATGTGGGGTCTGCATTTATGCTTGGAAGAGCATTGACATCTGTCGCCTGGGGAATGGTGGCTGATCGATATGGCCGAAAACCTGTTATAATGATAGGCACTATCGCAGTGGTTATTTTCAACACTCTTTTCGGTCTTAGTGTAAACTTCTGGATGGCCCTCTCTACAAGGTTTCTTCTTGGAAGTCTGAATGGTTTACTTGGGCCAATTAAGGCATATGCAGCTGAAATTTTCCGTGACGAATACCAAGCTCTAGGACTGTCAACAGTTAGTACAGCATGGGGCATAGGATTGATCATTGGACCAGCTTTGGGAGGTTTCCTTGCCCAGCCTGCAGAAAAGTATCCGGATATATTCTCTGAAGATTCTCTATTTGGAAGATTTCCATACTTCTTGCCCTGCCTGTTTATATCGGTTTATGCAATGATTGTAACCGTTGCTTGTTGTTGGCTTCCGGAAACATTGCACACACACAATGAAAACAAAAAATCAAGAGAAGACTCATATGATGCTTTGGAAGCGGCCAATGGTGGGTCTAATGCAAAAGAAAAAGAACAAGAAATTGAAGGAAGTGAACCAACTTCTAATGAAAGCCTCTTTATGAATTGGCCTTTGATGTCTTCTATCATTGTCTACTGTGTTTTTTCACTACATGATATGGCTTATACAGAGATATTCTCATTATGGGCTGTGAGTCCTAGAATACATGGGGGTTTGAGCTATTCAACTGATGATGTTGGTGTTGTTCTTGCAATCTCAGGTTTTGGCCTTTTAGTCTCCCAACTTACTCTATATCCACTTGTGGAGAGGTTTCTTGGGCCTGTGATGATCTGTCGCATTGCTGGTGTCTTGTCCATACCTTTGTTGGCGAGTTACCCTTTAATAGCCATGCTTTCTGGGTCCAGCCTCTCAGTGGTGTTGAATTGTGCATCTGTGCTAAAGAATGTTCTATCTGTGTCCATTATAACTGGCCTGTTCCTTCTGCAAAACAGTGCTGTGGACCAACACCAGAGAGGAACTGCTAATGGCATTTCTATGACTGCAATGTCTCTTTTCAAAGCAGCTGGTCCTGCTGGAGGAGGCGCACTCTTTTCTTGGGCACAAAAGCGACAGGATTCTGCTTTCTTCCCAGGTGACCAGATGGTTTTCTTAATCCTGAATGTGGTCGAGGCAATCGGAGTGCTCATGACATTCAAACCATTTCTAGTTCAAAGGCGTCGATAG 1464 43.72 MAAEQQVPLLKKVYYQNCSGCRVEQLKETRRGLPIRELLSIWTVVLCTALPISSLFPFLYFMIRDFHIAKREEDIGYYAGYVGSAFMLGRALTSVAWGMVADRYGRKPVIMIGTIAVVIFNTLFGLSVNFWMALSTRFLLGSLNGLLGPIKAYAAEIFRDEYQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPDIFSEDSLFGRFPYFLPCLFISVYAMIVTVACCWLPETLHTHNENKKSREDSYDALEAANGGSNAKEKEQEIEGSEPTSNESLFMNWPLMSSIIVYCVFSLHDMAYTEIFSLWAVSPRIHGGLSYSTDDVGVVLAISGFGLLVSQLTLYPLVERFLGPVMICRIAGVLSIPLLASYPLIAMLSGSSLSVVLNCASVLKNVLSVSIITGLFLLQNSAVDQHQRGTANGISMTAMSLFKAAGPAGGGALFSWAQKRQDSAFFPGDQMVFLILNVVEAIGVLMTFKPFLVQRRR* 488
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi13g00833 487 CDD MFS-SLC46-TetA-like 41 479 - -
Vivi13g00833 487 ProSiteProfiles Major facilitator superfamily (MFS) profile. 37 485 IPR020846 GO:0022857(InterPro)
Vivi13g00833 487 MobiDBLite consensus disorder prediction 255 275 - -
Vivi13g00833 487 Pfam Major Facilitator Superfamily 42 437 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Vivi13g00833 487 Gene3D MFS general substrate transporter like domains 35 478 IPR036259 -
Vivi13g00833 487 FunFam Protein ZINC INDUCED FACILITATOR-LIKE 1 36 477 - -
Vivi13g00833 487 PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 33 479 - GO:0005886(PANTHER)|GO:0009705(PANTHER)|GO:0022821(PANTHER)|GO:0090333(PANTHER)
Vivi13g00833 487 SUPERFAMILY MFS general substrate transporter 36 481 IPR036259 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi13g00833 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr13:15304226 Vivi13g00835 Vivi-Chr13:15348468 dispersed
Vivi Vivi-Chr13:15304226 Vivi13g00834 Vivi-Chr13:15320680 tandem