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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi13g00834 ATGGCGGAGAACTCGATTTCTTTTATATTCTCATTATGGGCTGTCAGTCCTAGAAAATATGGGGGTTTGAGCTATTCAACGGATGATGTAGGTGTAGTTCTTGCAATCTCAGGTTTTGGGGTTTTGGTATTCCAACTTTCTCTCTATCCATATTTGGAGAAGCTTCTTGGGCCCATCATCATCTGTCGCATTGCCGGTGTTTTGTCTATACCTCTGTTGGCAATTTACCCTCTTATAGCCATGCTTTCTGGGTTCAGCCTCTCTTTGGCATTGAATTGTGCATCGGCGATGAAGAATGTATTATCTGTGTCCATTGGAACTGGCTTGATTATTCTGCAAAATAGAGCTGTGGAGCAACACCAGAGAGGTGCTGCAAATGGCATCACTATGACTACAATGTCTCTTTTCAAAGCAGCAGGTCCTGCTGGAGGAGGTGTAATCTTTTCTTGGGCACAAGGGCGTCAGAGAGCTGCCTTCTTCCCAGGTGACTAG 492 44.92 MAENSISFIFSLWAVSPRKYGGLSYSTDDVGVVLAISGFGVLVFQLSLYPYLEKLLGPIIICRIAGVLSIPLLAIYPLIAMLSGFSLSLALNCASAMKNVLSVSIGTGLIILQNRAVEQHQRGAANGITMTTMSLFKAAGPAGGGVIFSWAQGRQRAAFFPGD* 164
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi13g00834 163 SUPERFAMILY MFS general substrate transporter 6 155 IPR036259 -
Vivi13g00834 163 Gene3D MFS general substrate transporter like domains 5 162 IPR036259 -
Vivi13g00834 163 PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 3 161 - GO:0005886(PANTHER)|GO:0009705(PANTHER)|GO:0022821(PANTHER)|GO:0090333(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi13g00834 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr13:15320680 Vivi13g00839 Vivi-Chr13:15444112 dispersed
Vivi Vivi-Chr13:15304226 Vivi13g00834 Vivi-Chr13:15320680 tandem
Vivi Vivi-Chr13:15320680 Vivi13g00835 Vivi-Chr13:15348468 tandem