AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi13g00858 ATGAAGCAAGAAGAAGTGAATCTATGCCAGATTCAGGAATGGTACCCGAAATTTAAATCTGTATCCATTAAAACCTTGATTCATGAACTTCCTGAGTCCTTTGTTGAGTACCTTCTTGATGATCATGGGCCATTCCTTCTTCCTGTTTCTGTCATAAATGAAGATGCACTTCCCAACAGAATCCATAATTCTGAAGAGGAGGAAGATTATCAAGTGTCAGAAGGGTCTGGAGATGAAGCAGAGCAGCCTCCATCACCCCCTTCTTTCCCAGAACTTGAATTGAAGATTAAAGAATCAATTGAATCCCTTGGGGGTGCTGTCTTCCCTAAGTTGAATTGGAGTGCACCCAAAGACTCTGCTTGGATTAGCACCACTGGGACCCTCCGGTGCACATCCTTCAGTGAGATTGCACTTTTGCTACGATCATCCGATTCATTGATCCATGATCTGTGCCATGCATATGACTCATGTAGTGATAAATCCTTGTCAAGGCCCCCCAATTTCTACCTTGCCCTACGCAAGTGGTACCCCTCCCTGCGGCCAGAAATGGAATTCCGTTGTTTTGTAAGGGATAGGCTCCTGGTTGGAATTTCCCAACGTGAGGTCACTGGATTTTATCCTGCTCTTCTTGAAAAGAAAAGTGCTCTTGAAGTGGTGATAAGGGAATTTTTTATGGACAAAGTGAGTCAAACTTTTGAATTGGAAAATTACACATTTGATGTTTATGTTACAATGGATGATCGAGGACATGGTGTGGAATTTAGAATTGTAGAGAGCCAATCTGCAGTTCGACCTGGGTTGAAGACTGCAGTTCCTTATGATTATTTGGCTACTGGCCCAGGAAGTGGTTGGGATCAATTTTTGAGGAATGCTGACCAGGAGTTGGAGAGACAGACCAGGAGAGACAGACCAGGTCTCCAGAAGCTGGTGGTTAAGATTTCATTGTTCTGGTTTTGTGGGTCAGTATTGCAATCCTCCCCACCTGCATCCCACCAAAACACATTGTTTTTTCATATATTTGTTTTTAGATGGTGGGTAAAATATTTGATACAGATGATTCATTTGTGA 1068 42.79 MKQEEVNLCQIQEWYPKFKSVSIKTLIHELPESFVEYLLDDHGPFLLPVSVINEDALPNRIHNSEEEEDYQVSEGSGDEAEQPPSPPSFPELELKIKESIESLGGAVFPKLNWSAPKDSAWISTTGTLRCTSFSEIALLLRSSDSLIHDLCHAYDSCSDKSLSRPPNFYLALRKWYPSLRPEMEFRCFVRDRLLVGISQREVTGFYPALLEKKSALEVVIREFFMDKVSQTFELENYTFDVYVTMDDRGHGVEFRIVESQSAVRPGLKTAVPYDYLATGPGSGWDQFLRNADQELERQTRRDRPGLQKLVVKISLFWFCGSVLQSSPPASHQNTLFFHIFVFRWWVKYLIQMIHL* 356
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi13g00858 355 Pfam D123 14 248 IPR009772 -
Vivi13g00858 355 MobiDBLite consensus disorder prediction 58 91 - -
Vivi13g00858 355 PANTHER D123 PROTEIN 1 248 IPR009772 GO:0005737(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi13g00858 K28153 translation initiation factor eIF2 assembly protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5448032 Vivi Vivi10g00506 Vivi-Chr10:7545885 Vivi13g00858 Vivi-Chr13:16080429