AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi15g00280 ATGTATAGAGAACGAGGCGGTGGATCGTCGAAATCGGAGATCGTGGGGGGTCCGCTCGATCGAAAGCGGATCAACGATGCGCTAGACAAGCACCTAGAGAAGTCGTCCCCTTCGACATCCAAGGGCCTGAGCAGCAAGGACAAAGAGAGGTTGTCGGTGCCGTCGACATCAGCCGGAAAATCGCAGCTCGACCACCGCGACACTCGCGCCGCGTCTCTCCCTAAGAACAAGTGCTCTGATGAGGAATCTGAAACTGACAGTGAAGAGTCAGATGTCAGTGGTTCTGATGGAGATGACACATCTTGGATCTCATGGTTCTGCAATTTGAGAGGAAATGAATTTTTCTGCGAAGTTGATGATGAATATATCCAAGATGATTTTAATCTTTGTGGGTTAAGCAGTCAAGTTCCATATTACGATTATGCTCTTGACCTAATTTTGGACGTTGAGTCCTCTCATGGTGATATGTTCACTGAAGAGCAGAATGAATTGGTTGAATCTGCTGCAGAGATGCTGTACGGTCTTATTCATGTCCGGTACATTCTTACCAGCAAGGGAATGTCTGCAATGTTAGAGAAGTACAAGAGCTATGACTTTGGGAGATGCCCAAGAGTTTACTGCTGTGGACAGCCCTGTCTTCCAGTTGGTCAATCAGACATTCCTCGTTCAAGTACTGTAAAGATTTACTGTCCCAAATGTGAAGATATATATTACCCTCGATCCAAGTACCAAGGCAATATTGATGGAGCTTACTTTGGAACCACATTTCCTCATCTATTTCTGATGACATATGGTCACCTGAAGCCACAGAAGGCAGCGCAGAGCTACGTCCCAAGAGTATTTGGCTTCAAGATCCACAAGCCATGA 867 46.25 MYRERGGGSSKSEIVGGPLDRKRINDALDKHLEKSSPSTSKGLSSKDKERLSVPSTSAGKSQLDHRDTRAASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMSAMLEKYKSYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAAQSYVPRVFGFKIHKP* 289
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi15g00280 288 MobiDBLite consensus disorder prediction 62 82 - -
Vivi15g00280 288 SMART CK-II-beta-2 101 284 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Vivi15g00280 288 Gene3D - 199 273 - -
Vivi15g00280 288 SUPERFAMILY Casein kinase II beta subunit 99 287 IPR035991 GO:0005956(InterPro)|GO:0019887(InterPro)
Vivi15g00280 288 FunFam Casein kinase II subunit beta 94 198 - -
Vivi15g00280 288 PRINTS Casein kinase II regulatory subunit family signature 101 117 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Vivi15g00280 288 PRINTS Casein kinase II regulatory subunit family signature 198 219 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Vivi15g00280 288 PRINTS Casein kinase II regulatory subunit family signature 173 194 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Vivi15g00280 288 PRINTS Casein kinase II regulatory subunit family signature 220 241 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Vivi15g00280 288 PRINTS Casein kinase II regulatory subunit family signature 118 132 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Vivi15g00280 288 PRINTS Casein kinase II regulatory subunit family signature 248 265 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Vivi15g00280 288 ProSitePatterns Casein kinase II regulatory subunit signature. 202 233 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Vivi15g00280 288 MobiDBLite consensus disorder prediction 1 97 - -
Vivi15g00280 288 PANTHER CASEIN KINASE II SUBUNIT BETA 81 287 IPR000704 GO:0005737(PANTHER)|GO:0005956(PANTHER)|GO:0005956(InterPro)|GO:0019887(InterPro)|GO:0019887(PANTHER)
Vivi15g00280 288 MobiDBLite consensus disorder prediction 16 36 - -
Vivi15g00280 288 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 94 198 IPR016149 GO:0005956(InterPro)|GO:0019887(InterPro)
Vivi15g00280 288 FunFam Casein kinase II subunit beta 199 273 - -
Vivi15g00280 288 Pfam Casein kinase II regulatory subunit 101 284 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi15g00280 K03115 casein kinase II subunit beta
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr15:11003261 Vivi2g00570 Vivi-Chr2:5692458 wgd