AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi15g00288 ATGGATTGCCCCAAGAACTCCATTGGGAACTTCGCCATTGCTCTACTCCTTATCGAGGTTGTCTATCTCTGCCTCTCCTGTCAATTCCAGACCTTCCAATGGCCCCAACCACCCACTAAAGCTCTCGAGGCGGTGCCTCAAGACGATCTCGAAGCAGCGTTGAGCAAAGCATCAATGCCCAACAAGACTGTAATAATCACAATAGTGAACAAAGCCTATGTCGAAGGCGACGACACATCGATGCTGGATCTTTTTCTGGAGAGCTTCTGGATCGGAGAAGGCACTAGGGAGATGGCGGACCACCTCTTGGTGGTGGCGGGGGACCAGACGGCGTACGACCGCTGCATTTTCCGGAGACTCCACTGCTACAAAATGGTGGGCGAGGACGGAGATATGGAGGGGGAGAAACTTTACATGTCGGAGGACTTCATCGAGATGATGTGGAGAAGGACTCTCCTTCTCCTGCATGTGCTCGAGCGTGGCTACAGTTTCATCTTCACGGACACGGATGTAAGTTGGCTGAGGAACCCATTTCCAAGGTTAACCACAAACCTAACTGCAGATCTCCAAATCAGCACCGACAAGTTCCTCAGCAGCCACCGGCCGGAAGACAACTCCATTAACACCGGATTCTACTTCGTCCGATCAAACAACAAGACCATTGCCCTCTTTCAAACCTGGTATGCCATGAAGAACAACTCCATAGGGAAGAAAGAACAAGATGTACTATCAGACCTTATGCTGAAGGGCATTTTTAGGCAGCTGGGTCTTGAAGTAAGGGCCCTTCACACCCTCTACTTCAGTGGGTTTTGCCAAGATAGCAAAGACTTTAGGGCAGTCACCACTGTCCATGCTAACTGCTGCAGAAGTATTAGCGCCAAGGTGGCTGATCTCAAGGCCGTCCACCGTGACTGGAGGCGGTTCAAGGCGGCCACCGCCACCAACAAGACGGTCACCGACGTTGATGCTGCGACTTTCCGGTGGTCTGCTCATGCAGCATGTGTCAATTCCTGGAATATTCCGATGAATACTGTGGGATGA 1041 51.49 MDCPKNSIGNFAIALLLIEVVYLCLSCQFQTFQWPQPPTKALEAVPQDDLEAALSKASMPNKTVIITIVNKAYVEGDDTSMLDLFLESFWIGEGTREMADHLLVVAGDQTAYDRCIFRRLHCYKMVGEDGDMEGEKLYMSEDFIEMMWRRTLLLLHVLERGYSFIFTDTDVSWLRNPFPRLTTNLTADLQISTDKFLSSHRPEDNSINTGFYFVRSNNKTIALFQTWYAMKNNSIGKKEQDVLSDLMLKGIFRQLGLEVRALHTLYFSGFCQDSKDFRAVTTVHANCCRSISAKVADLKAVHRDWRRFKAATATNKTVTDVDAATFRWSAHAACVNSWNIPMNTVG* 347
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi15g00288 346 Pfam Nucleotide-diphospho-sugar transferase 99 298 IPR005069 -
Vivi15g00288 346 PANTHER EXPRESSED PROTEIN-RELATED 18 334 IPR044821 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi15g00288 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr15:11181032 Vivi16g00082 Vivi-Chr16:1102688 dispersed
Vivi Vivi-Chr15:11181032 Vivi15g00289 Vivi-Chr15:11203909 tandem