AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi15g00309 | ATGGCCATTCTGGCTATTCCCTTGGTCGTCTCGGTTCTCAAGCCCCACCACTCGCTTCACTTCTCCTTCTTCCGTAGCCGAAACTCTAGCCGCCTCTGCAGCCCTTTCACCCGCATCTCTCCTCTTCGCTCCTCCAAAACCACCATCGCTGCGATCACCACCTCCGCTATCCCGCATAATTCTTCTACCGACCCTAACACTGACTCAAATAAGGCTTCGGTTCCTACATTTCAACAAGCGATTCAGCGCCTCCAGGAATATTGGGCTTCAGTTGGTTGTGCTGTAATGCAATGTAGCAACACTGAGGTTGGAGCTGGGACTATGAATCCTTTAACATTCCTGAGGGTTCTTGGTCCAGAACCATGGAATGTTGCGTATGTTGAGCCTAGTATTCGACCGGATGATAGTCGTTTTGGGGAGAATCCAAATAGGCTCCAACGCCACACTCAATTTCAGGTTATTTTGAAGCCTGATCCTGGAAATTCACAAGACCTCTTTCTTCGTAGCTTATCAGCTTTAGGTATTAATATTAATGAACATGATATACGTTTTGTGGAGGACAACTGGGAAAGCCCGGTTCTTGGTGCTTGGGGATTGGGATGGGAAATCTGGATGGACGGAATGGAGATCACACAGTTCACCTACTTTCAGCAGGCTGGAAGTCTTCAACTGCTGCCCATCTCAGTTGAAATCACTTATGGTCTAGAGCGTATCCTCATGTTGCTTCAGGGAGTTGATCATTTCAAGAAAATTCAATATGCTGATGGAATTACATACGGGGAACTGTTCATGGAGAATGAGAAGGAAATGAGTTCTTATTATCTTGAACATGCTAGTGTCCATCATATCCAGAAACACTTCGATTTTTTTGAGGAAGAAGCCCGCTCCTTGCTTGCTTTGGGCCTTGCAATCCCTGCGTATGATCAGCTTCTGAAGACATCTCATGCTTTTAACATCTTAGATTCTAGAGGCTTTGTGGGAGTAACAGAGCGTGCACGCTATTTTGGACGGATGCGGAGTTTAGCTCGTCAATGCGCTCAACTTTGGTTAAAGACCAGAGAGTCACTTGGACATCCACTGGGCACTATTTCTGAACCTGATCAGCTGGTTTGTCCCAAAGAGATTCTGGAGGCAGCAGTCCAAAGGGTGCATGAGGATCCAAGGTTGTTCCTTCTTGAAATTGGAACGGAGGAGTTGCCCCCTCAAGATGTGGCTAGTGCAAGCCAGCAACTCAAGGATTTAATCATGCAGTTGCTAGATAAACAAAGATTGGGCCACAGCGAAGTACAGGCATTTGGTACACCACGCAGATTAGTGGTTTGTGTTAAGAATCTCTCTACCAAGCAAGCGGAAAATGAAGTAGAAGTTCGAGGACCTCCAGTTTCTAAGGCATTTGATGGTCAAAGAAATCCTACGAAGGCTGCTGAGGGTTTTTGTCGTAGATACTGTGTATCTCTGGACTCCTTATATAAAAAAGTTGATGGGAAAACAGAGTATGTTTATGTTCGTGTAATGGAGTCTGCTCGACTTGCTTTGGAGGTTTTATCCGAAGATTTGCCTCGTATCATTGCTAAAATATCCTTCCCAAAGTCAATGCGATGGAATTCCCAGGTTATGTTTAGCAGACCTATCCGTTGGATTTTAGCCCTCCATGGAGATGTAGTTGTGCCATTTATGTTTGCTGGAGTTTTAAGTGGAAACCTATCTTATGGTCTTCGTAATACTTCTTCAGCTACCATTAAGGTGGAAAGTGCAGAATCTTATGCCACTGTAATAAGGAATGCTGGAATTTCCTTAGATATTGAGGAACGCAAGCAAACAATTTTGGAGCAGTGTAATGCATTAGCAAAAGGTGTGAATGGGCATATTCTTCTGCAAGGCAGCTTACTGGATGAGGTTGTAAATCTTGTTGAGGCACCTGTTCCAGTTATTGGGAAGTTTAAGGAGTCCTTCTTAGAGCTTCCGAAAGATCTTTTAACTATGGTTATGCAAAAGCATCAGAAGTATTTTGCCATCACAGATGACAGCGGAAGACTGTTGCCATACTTCATTACTGTAGCGAATGGAGCAATCAATGAGATGGTAGTGAGGAAAGGAAATGAAGCTGTACTCAGAGCTCGCTATGAAGATGCAAAGTTTTTCTATGAGATGGACACTCGAAAAAAGTTCTCAGAATTTCGAAGTCAACTGGAAGGGATTCTTTTTCATGAGAAGCTAGGAACGATGCTGGATAAGATGATACGTGTTCAAAACATGGTTGCTGAGCTAAGTTTGGCCTTGCAAGTCAATGAAGATAAGCTTCAAATTATCCAGGATGCTGCATCACTGGCAATGTCTGATCTTGCCACAGCTGTTGTTACGGAATTTACTTCTCTCTCAGGAATAATGGCACGCCATTATGCTCTTAGAGATGGCTATTCAGAGCAGATTGCAGAGGCCTTGTTTGAGATAACACTTCCAAGAAATTCTGGGGATATAGTGCCAAAAACTGATGTGGGAATTGTCTTGGCAGTTGCTGACAGATTAGATAGCCTTGTTGGTTTATTTGGTGCTGGTTGCCAGCCAAGTTCAACTAATGACCCATTTGGGCTGAGAAGAATTTCTTATGGTCTTGTACAAGTGTTGGTTGAAAAGGATAAAAATTTGGACCTAAGACATGCATTGCAACTGGCTGCTGCTGTCCAACCAATAACAATAGAAGCCAATATAATAGATGATGTACATCAATTTGTAACACGGAGATTAGAGCAATTTCTGGTTGATAGGGAAATAAGTCCAGAGGTGGTTCGTTCTATCCTGACAGAGCGTGCAAACTGGCCTTGTTTGGCAACAAAGTCAGCATACAAAATGGATGCCATGTCAAGAGGTGAGCTTCTGCCGAAGGTTGTTGAAGCCTATTCTCGTCCAACAAGAATTGTTCGTGGAAAGGATGTGGAAGCTGATATGGAGGTGGATGAAGCTTCATTTGAGACAAATGAGGAGAGAGCTTTGTGGAGGGCTTTCTTATCAGTTAGAAACAAAATATATCCTGGTATTGAGGTTGATGATTTTTTCGAAGCATCTTCCCAACTGCTACAGCCTCTTGAGGATTTCTTTAATAATGTCTTTGTTATGGTGGAAGAAGAAAGAATTAGAAAGAACAGGCTTGCACTACTCAAGAAAATTGCAGACCTTCCAAAAGGGATAGCAGATCTCTCAGTTTTGCCAGGCTTTTAA | 3216 | 43.28 | MAILAIPLVVSVLKPHHSLHFSFFRSRNSSRLCSPFTRISPLRSSKTTIAAITTSAIPHNSSTDPNTDSNKASVPTFQQAIQRLQEYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRFGENPNRLQRHTQFQVILKPDPGNSQDLFLRSLSALGININEHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLLPISVEITYGLERILMLLQGVDHFKKIQYADGITYGELFMENEKEMSSYYLEHASVHHIQKHFDFFEEEARSLLALGLAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRESLGHPLGTISEPDQLVCPKEILEAAVQRVHEDPRLFLLEIGTEELPPQDVASASQQLKDLIMQLLDKQRLGHSEVQAFGTPRRLVVCVKNLSTKQAENEVEVRGPPVSKAFDGQRNPTKAAEGFCRRYCVSLDSLYKKVDGKTEYVYVRVMESARLALEVLSEDLPRIIAKISFPKSMRWNSQVMFSRPIRWILALHGDVVVPFMFAGVLSGNLSYGLRNTSSATIKVESAESYATVIRNAGISLDIEERKQTILEQCNALAKGVNGHILLQGSLLDEVVNLVEAPVPVIGKFKESFLELPKDLLTMVMQKHQKYFAITDDSGRLLPYFITVANGAINEMVVRKGNEAVLRARYEDAKFFYEMDTRKKFSEFRSQLEGILFHEKLGTMLDKMIRVQNMVAELSLALQVNEDKLQIIQDAASLAMSDLATAVVTEFTSLSGIMARHYALRDGYSEQIAEALFEITLPRNSGDIVPKTDVGIVLAVADRLDSLVGLFGAGCQPSSTNDPFGLRRISYGLVQVLVEKDKNLDLRHALQLAAAVQPITIEANIIDDVHQFVTRRLEQFLVDREISPEVVRSILTERANWPCLATKSAYKMDAMSRGELLPKVVEAYSRPTRIVRGKDVEADMEVDEASFETNEERALWRAFLSVRNKIYPGIEVDDFFEASSQLLQPLEDFFNNVFVMVEEERIRKNRLALLKKIADLPKGIADLSVLPGF* | 1072 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi15g00309 | 1071 | Gene3D | Bira Bifunctional Protein; Domain 2 | 62 | 278 | IPR045864 | - | |
| Vivi15g00309 | 1071 | FunFam | Glycine--tRNA ligase alpha subunit | 69 | 278 | - | - | |
| Vivi15g00309 | 1071 | FunFam | Glycine--tRNA ligase, chloroplastic-mitochondrial 2 | 279 | 358 | - | - | |
| Vivi15g00309 | 1071 | SUPERFAMILY | HD-domain-PDEase-like | 717 | 847 | - | - | |
| Vivi15g00309 | 1071 | Hamap | Glycine--tRNA ligase alpha subunit [glyQ]. | 75 | 355 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Vivi15g00309 | 1071 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 129 | 144 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Vivi15g00309 | 1071 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 315 | 331 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Vivi15g00309 | 1071 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 207 | 227 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Vivi15g00309 | 1071 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 150 | 170 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Vivi15g00309 | 1071 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 181 | 205 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Vivi15g00309 | 1071 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 230 | 245 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Vivi15g00309 | 1071 | Hamap | Glycine--tRNA ligase beta subunit [glyS]. | 387 | 1068 | IPR015944 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Vivi15g00309 | 1071 | Pfam | Glycyl-tRNA synthetase alpha subunit | 77 | 354 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Vivi15g00309 | 1071 | Pfam | DALR anticodon binding domain | 964 | 1056 | IPR008909 | GO:0004814(InterPro)|GO:0005524(InterPro)|GO:0006420(InterPro) | |
| Vivi15g00309 | 1071 | ProSiteProfiles | Heterodimeric glycyl-transfer RNA synthetases family profile. | 744 | 1033 | IPR006194 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Vivi15g00309 | 1071 | Gene3D | Class II aaRS and biotin synthetases; domain 2 | 279 | 358 | - | - | |
| Vivi15g00309 | 1071 | ProSiteProfiles | Heterodimeric glycyl-transfer RNA synthetases family profile. | 76 | 350 | IPR006194 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Vivi15g00309 | 1071 | SUPERFAMILY | Class II aaRS and biotin synthetases | 76 | 355 | IPR045864 | - | |
| Vivi15g00309 | 1071 | CDD | GlyRS-alpha-core | 76 | 354 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Vivi15g00309 | 1071 | Pfam | Glycyl-tRNA synthetase beta subunit | 390 | 933 | IPR015944 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Vivi15g00309 | 1071 | NCBIfam | glycine--tRNA ligase subunit beta | 390 | 1068 | IPR015944 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Vivi15g00309 | 1071 | PANTHER | GLYCYL-TRNA SYNTHETASE | 76 | 1071 | IPR006194 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0005739(PANTHER)|GO:0006426(InterPro)|GO:0009570(PANTHER) | |
| Vivi15g00309 | 1071 | NCBIfam | glycine--tRNA ligase subunit alpha | 76 | 360 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi15g00309 | K14164 | glycyl-tRNA synthetase [EC:6.1.1.14] | ||||
| Vivi15g00309 | K01879 | glycyl-tRNA synthetase beta chain [EC:6.1.1.14] |