AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi15g00311 ATGGCGGAAGAAGAAGTGGCGATCGAAGTTGAAGCCGTACAAGCAGTCTATGGCGAAGATTGTCTGGTTCTCGATCACTTCCCTCCCCATCTTCACGTCCATATCAAGCCTCGGACCGCTGACGTTTCATCGCAACAGTTTGTTGAAGCAGTTCTTGGGATACAAGCAGGTTCAAAGTATCCAAATGAACCACCGATTATTGATATTATAGATTCCAAGGGACTAGATGAAGAAAGGCAAATGCATCTGATAAGAAGTATACGGAACAAAGCTTGTGAACTCTCCTCTTGTTTAATGCTTGTAGCACTTTGTGAGGAAGCGGTGGAGAGACTGTCTACAATGAATCACCCAGATGGAAATTGTCCATTATGTTTATATCCTTTGTTTCCAGAACATAAGCAAAATAATATTCTGCCATTTATGAAGTTGATGTCTTGTTTTCATTGTTTTCACAGTGAATGCATTATAAGGTGGTGGAATTGGCTTCAAACTCAAGAAGAGATGGACCCTGATAACTCATCTAGCGCAATTGTACAACCTTCAAACGAGATAGAACAGCAACAAGGCATGCATGGAATGACTGAAGGGAGTACAGGAAACTGCCCTGTTTGTCGTAAGGTCTTCCATGCCAAAGATATTGAACATGTGCTTAGCTTGGTTGGTTCTCACTCCTCGAATTTGAGTTCCAATGGGACTGAAATCACTGATGACGAGAAGCTCCTTCATTCTGATTCAGAATTAACCAGAAGACTGAAATTTGAAGCCGTACTGAAATTACAGGAAGAAAATAGTGGCTTAATTGAGCCCAAAAAAAATGGTGTCATAGTTCCAGGTATGTTTCTTCAGCGGCCAATTGCACCACCTCCAGCTTTATCGGCCAAAGGACCCACCTCTGAGCAACAGCAGAGGGATGCTATAACTTTTTCTGAAACTAGCTCAAGTGGTTCCTCAAGTAGGGCTAGTACCAGTGAGCAGAGGAACCTTGGCATGAGAAGGCACAGGGTAAGAAATTCAAGAAAACCAGTCAAGCAGTGGGTTAAGAAAGATAATACTCCTCCTACAAACTAA 1068 42.42 MAEEEVAIEVEAVQAVYGEDCLVLDHFPPHLHVHIKPRTADVSSQQFVEAVLGIQAGSKYPNEPPIIDIIDSKGLDEERQMHLIRSIRNKACELSSCLMLVALCEEAVERLSTMNHPDGNCPLCLYPLFPEHKQNNILPFMKLMSCFHCFHSECIIRWWNWLQTQEEMDPDNSSSAIVQPSNEIEQQQGMHGMTEGSTGNCPVCRKVFHAKDIEHVLSLVGSHSSNLSSNGTEITDDEKLLHSDSELTRRLKFEAVLKLQEENSGLIEPKKNGVIVPGMFLQRPIAPPPALSAKGPTSEQQQRDAITFSETSSSGSSSRASTSEQRNLGMRRHRVRNSRKPVKQWVKKDNTPPTN* 356
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi15g00311 355 SMART ring-2 121 204 IPR001841 -
Vivi15g00311 355 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 117 220 IPR013083 -
Vivi15g00311 355 SMART RWD2001b 8 114 IPR006575 GO:0005515(InterPro)
Vivi15g00311 355 MobiDBLite consensus disorder prediction 294 325 - -
Vivi15g00311 355 ProSiteProfiles Zinc finger RING-type profile. 121 205 IPR001841 -
Vivi15g00311 355 Pfam RWD domain 4 110 IPR006575 GO:0005515(InterPro)
Vivi15g00311 355 SUPERFAMILY UBC-like 3 111 IPR016135 -
Vivi15g00311 355 PANTHER RING FINGER PROTEIN 25 1 337 IPR039133 GO:0005634(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)
Vivi15g00311 355 SUPERFAMILY RING-U-box 112 164 - -
Vivi15g00311 355 FunFam RWD domain-containing protein 117 220 - -
Vivi15g00311 355 MobiDBLite consensus disorder prediction 286 355 - -
Vivi15g00311 355 Gene3D Ubiquitin Conjugating Enzyme 1 116 IPR016135 -
Vivi15g00311 355 FunFam RWD domain-containing protein 1 116 - -
Vivi15g00311 355 ProSiteProfiles RWD domain profile. 8 114 IPR006575 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi15g00311 K10640 E3 ubiquitin-protein ligase RNF25 [EC:2.3.2.27]