AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi15g00314 ATGGAGGTGGCATCTGAAACGGTGGAGAAGGTTGAGTCCTCTCGATCCATGGAACATTCTCCCTCTAAGTCATCCTTGGACTCCGCCTCCGAAGCCTCCGATCAGCCGGATCGCACCGATCCATCCAACGCTTCTCCTAATCCACTCAAGGATGTTGATTTTCTTCAGTCTCCAGCGGCATTGAAGAGTGAAGAGTATCGACAGCTGTTCCGTCTTCCACTTGAGGAAGTACTTGTTCAAGATTTTAATTGTGCATTGCAGGAGAGTATTCTTTTTCAGGGTCATATGTATCTGTTCGTTCGTTATATTTGCTTTTATTCCAACATATTTGGGTTTGAGACAAAGAGAATAATTCCATTCCAAGAAGTCACATGTGTAAAAAGAGCGAAGACAGCGGGGATTTTTCCTAATGCAATAGAAATTTTAGCTGGAGAAAAGAAGTATTTCTTTGCATCTTTCCTATCTCGTGATGAAGCTTTCAAGCTCATTAATGATGGGTGGTTGCGACATAGCGATGGAGTCAAAGCAATTTCAGAACAGCAGGAGTCATTATCGGATGGTTGCTTAGATAATGGAATTGTTGCAGATGAAGAAGTAAAGAGCTCTGAAGAGCCAGTCAATGAATTGGATTCCATTGACAGGAATAAAGATCCTCCGCTTTCTAAAGATTCTAAGCTTCCATCCGATGCCAAAGATGACATTGTGCCAATAACACCTGCAGACCAGCAAGATAATGTGGAACAGAATGTGGAATCAGTTCCAATTACTGACTCTTCGTCTTCTGGAAATATTTTGACATGGAAGCAGGAGAATTCTGTTGCACCTAAGGTACCTGAATATTACTCAAATGTTGCAGAGGCAAAGTTTCCGATAAAGGTGGAGGAGTTTTTTACTTTCTTTTTTTCAGATGATGCTGTGGATTTTATTGAATCATTTCATAAAAGATGTGGAGATAAAGAGTTCAGGTGCACTTCATGGTCCCCTCACGACAAATTTGGGCATGCCCGTGATAAGTCATTTCAACATCCAATAAAACTATATTTTGGTGCAAAATTTGGCAGCTGTCGGGAGGCTCAGAAATTTCGTGTTTACAAAAACAGTCATTTGATTATTGAGACATCACAAGAAGTCAATGATGTACCCTATGGAGATTATTTCACTGTTGAGGGGCTTTGGAATGTGGAGAGTGATGGTGATGAATCAAATGGAGGCTGCATTTTGCGGGTATATGTGAATGTGGCTTTTTCCAAGAAAACCATGTGGAAAGGGAAAATAGTGCAGTCCACTGTGGAAGAGTGTCGAGAAGCTTATGCTATCTGGATATCCCTTGCACATGAATTGTTGAAGCAAAAGAACCTTGAAAAACAAGAGGAAATTCGCAGCACTCGCACTGCTGAGAACAGTCGAGCTCATTTAGAAAGGCAAGTAGAGATGGAGGAAACTTCAGAAAGGTCACATGAGGCAGCCAACTCTTCGAAGATCCCTCATATGTGCGATTCTAGGGATGTTAACCATGGCAATCTCTTACAGGGAAATACAGTTACTTCCTTTTCATCTCTATTGAGTGAATGGATGGTGAAATTTTCGACTTTGAAAAATCAAAGACATCTTCAATTACTCTTCCTTATCACCTTTGTTTTGATCCTCCTCCTGATGCAGTTAAGCATAGTTGTGCTGTTAGCCAGACCCCAGAGAGTCCAGGTCATTTCCCAAGCAGACTACATGAATGGCATGGACATCTCGGGTTCAGGTGAAAGATCGTCGGAAGCGGTCGCATGGTTGGAGAAGCGGATTCATCACCTCAAGGACGAGATGTTCATGGTAGAGGCTCGGATTGAGAGGATGCGGCGGGAGTACGTACAATTGAAAGCACAACTGAAAGACCTAGAGCATCTCCGGCAGCTTAAGAAGACAATATAA 1920 42.29 MEVASETVEKVESSRSMEHSPSKSSLDSASEASDQPDRTDPSNASPNPLKDVDFLQSPAALKSEEYRQLFRLPLEEVLVQDFNCALQESILFQGHMYLFVRYICFYSNIFGFETKRIIPFQEVTCVKRAKTAGIFPNAIEILAGEKKYFFASFLSRDEAFKLINDGWLRHSDGVKAISEQQESLSDGCLDNGIVADEEVKSSEEPVNELDSIDRNKDPPLSKDSKLPSDAKDDIVPITPADQQDNVEQNVESVPITDSSSSGNILTWKQENSVAPKVPEYYSNVAEAKFPIKVEEFFTFFFSDDAVDFIESFHKRCGDKEFRCTSWSPHDKFGHARDKSFQHPIKLYFGAKFGSCREAQKFRVYKNSHLIIETSQEVNDVPYGDYFTVEGLWNVESDGDESNGGCILRVYVNVAFSKKTMWKGKIVQSTVEECREAYAIWISLAHELLKQKNLEKQEEIRSTRTAENSRAHLERQVEMEETSERSHEAANSSKIPHMCDSRDVNHGNLLQGNTVTSFSSLLSEWMVKFSTLKNQRHLQLLFLITFVLILLLMQLSIVVLLARPQRVQVISQADYMNGMDISGSGERSSEAVAWLEKRIHHLKDEMFMVEARIERMRREYVQLKAQLKDLEHLRQLKKTI* 640
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi15g00314 639 Coils Coil 598 632 - -
Vivi15g00314 639 SMART gram2001c 64 130 IPR004182 -
Vivi15g00314 639 MobiDBLite consensus disorder prediction 1 50 - -
Vivi15g00314 639 Gene3D - 62 169 IPR011993 -
Vivi15g00314 639 MobiDBLite consensus disorder prediction 18 50 - -
Vivi15g00314 639 MobiDBLite consensus disorder prediction 459 496 - -
Vivi15g00314 639 ProSiteProfiles VASt domain profile. 280 452 IPR031968 -
Vivi15g00314 639 PANTHER PROTEIN VASCULAR ASSOCIATED DEATH 1, CHLOROPLASTIC 11 633 - GO:0043069(PANTHER)
Vivi15g00314 639 Pfam VAD1 Analog of StAR-related lipid transfer domain 284 431 IPR031968 -
Vivi15g00314 639 MobiDBLite consensus disorder prediction 199 230 - -
Vivi15g00314 639 CDD PH-GRAM-GRAMDC 75 167 - -
Vivi15g00314 639 MobiDBLite consensus disorder prediction 459 490 - -
Vivi15g00314 639 MobiDBLite consensus disorder prediction 199 232 - -
Vivi15g00314 639 FunFam GRAM domain containing 1B 62 170 - -
Vivi15g00314 639 Pfam GRAM domain 66 169 IPR004182 -
Vivi15g00314 639 MobiDBLite consensus disorder prediction 1 17 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi15g00314 K27900 vascular associated death 1, chloroplastic