AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi15g00355 | ATGAACTACGAACAGAGACTCATTGCCGCGGCGAAGCTTGTTCTCGATGGAGACGCACGCGCCGAGGACGCGCCGGTGAATTGGGGCGAATTCGGGGTCACGGCGACGCTTAAACCTCACCAAGTCGAAGGAGTTTCATGGCTTATACGAAGGTATCTCCTCGGCGTCAACGTTGTTCTCGGTAGGATGGGGCTAGGGAAGACTCTGCAAGCCATCTCTTTCTTGAGCTACATGAAAGTCCATCAGAAGTCACCTGGGCCATTTTTGGTATTATGTCCTCTAAGTGTGACGGATGGTTGGGTATCAGAGATAGCAAACTTTGCTCCAAAATTAAGAGTTCTTAGGTATGTTGGTGACAAAGAACACAGACGCAGTCTTCGAAGGACAATATATGAGCAAGTAAAAGAACAGTGCTCAAAGTCTGATGTATCAGCCCTTCCTTTTGACTTGCTGCTGACAACATATGATATAGCATTGATGGATCAGCATTTTCTCTCCCAAATTCCATGGCATTATGCGATAATTGATGAAGCACAAAGACTTAAAAATCCTTCAAGTGTGTTATATAATGTTCTTAAAGAACGGTTTGTCATGCCAAGACGGTTACTGATGACTGGAACACCTATTCAGAACAATCTCACAGAACTTTGGGCTCTGATGCATTTTTGTATGCCGTCAATATTTGGGACGTTAGAGCAGTTTCTTTCCACATTCAAGGAAGACGGACATCCTTCTTCAGGTGAAAAGGTGGCTGAAGTTAAGGATCAGTTCAGAACTTTAAAATATATATTGGGAGCTTTCATGCTTCGTCGAATGAAATCTAAGCTTATTGAGTGTGGAACTCTTGTGCTGCCCCCTCTTACTGAGATTACTGTGATGGCTCCACTGGTTTCCCTGCAAAAGAAGGTGTATATGTCAATATTGAGGAAGGAACTTCCTAAACTTCTTGCATTCTCTTCTGGACCATCAGGTCACCAGTCCTTACAGAATATTGTAATACAGTTAAGAAAAGCATGTAGCCATCCCTATCTTTTCCCTGGTATTGAGCCTGAACCATATGAGGAGGGTGAACACCTGGTTCAGGCTAGTGGTAAACTTATAATCTTGGATCAACTACTTCAGAAGCTATATAACTCTGGACATCGTGTTCTTCTGTTTGCTCAGATGACTCATACACTAGATATTTTACAGGATTTCATGGAGTTGCGGAAATATTCTTATGAGCGTCTTGATGGATCAGTTCGGGCTGAGGAGCGCTTTTCTGCAATAAGAAGTTTCAGCCGGCAAATAGTTGAAGGCAGTTTGAATTCCCAAGATGTGCAAAGTAGTGCTTTTGTCTTTATGATCTCTACAAGAGCTGGGGGCGTTGGCTTGAATCTTGTGGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAATCCTCAGGTGGACAAGCAGGCTTTGCAGCGGGCACACCGTATTGGTCAGATGAATCATGTGTTGTCTATAAATCTAGTTACAGGACGCACGGTAGAGGAGATTATAATGCGCAGAGCAGAGAGGAAGCTGCAGCTTAGCCATAATGTTGTCGGGGAGGTTGACATTGATAGGGAAGGGAAGGAAATGGCTGGAGCTGAAGCTGGTGATTTGCGATCTGTCATATTTGGGTTACGTATGATTGATCCTTCAGAAATCAATAATGATGAATCAAGTGAACCAAATATGTCAGAATTGGATGCCATGGCTGACAAGGTAGTAGCAATCCGCCATGAACAACAATTGGGCAAGGATGATAGGAAATTTGAGGTTAACCCAATGGATCTTTTAAAAGGACATGATCTTATTATGGACAGAAGTTCCGTTTCTGTTGATTTTGACCCTGCTGCAAGGAAGAAGGCAGAGGAGGAGAAGCTAGCCAAGTGGGAAGCTCATGGTTACAATTCATTATCTGTCAAAGATCCTCCTTCCCATGTTGATGTTGACATGATATCAGATTCAGGTTCTGTTGACTTTGTTTATGGAGATTGTACACTTCCCTCAAAAGTTTGTCCATCTGAGGCTACTATCATATTCAGTTGCATTGATGACTCTGGGATCTGGGGCCATGGAGGAATGTTTGATGCCCTGGCCAGGCTTTCTTCAAGTGTTCCTGATGCATATCAACGAGCTTCTGAATTTAAGGACCTTCATCTTGGTGATCTTCATTTTATAAAAATCAATGAGGACTGTGAAGAACAGAGAATGGACTGTAATGCTCCTCAGTGGGTGGCTCTCGCTGTAGTACAATCATATAATCCTAGGCGTAAAGTACCTCGCAGCAATATCTCTGTTCCTGACTTGGAATGTTGCTTATCAAAGGCGTCATTCTTGGCTGCTCAAAAATCTGCTTCAATCCACATGCCACGTATTGGCTATCAAGATCGCTCAGAATGGTATACCGTGGAACGTCTTCTACGAAAATATGCTTCCCTATATGGCATAAAGATTTTTGTGTACTATTTCCGAAGGTCATCTTGA | 2499 | 43.1 | MNYEQRLIAAAKLVLDGDARAEDAPVNWGEFGVTATLKPHQVEGVSWLIRRYLLGVNVVLGRMGLGKTLQAISFLSYMKVHQKSPGPFLVLCPLSVTDGWVSEIANFAPKLRVLRYVGDKEHRRSLRRTIYEQVKEQCSKSDVSALPFDLLLTTYDIALMDQHFLSQIPWHYAIIDEAQRLKNPSSVLYNVLKERFVMPRRLLMTGTPIQNNLTELWALMHFCMPSIFGTLEQFLSTFKEDGHPSSGEKVAEVKDQFRTLKYILGAFMLRRMKSKLIECGTLVLPPLTEITVMAPLVSLQKKVYMSILRKELPKLLAFSSGPSGHQSLQNIVIQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLIILDQLLQKLYNSGHRVLLFAQMTHTLDILQDFMELRKYSYERLDGSVRAEERFSAIRSFSRQIVEGSLNSQDVQSSAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSINLVTGRTVEEIIMRRAERKLQLSHNVVGEVDIDREGKEMAGAEAGDLRSVIFGLRMIDPSEINNDESSEPNMSELDAMADKVVAIRHEQQLGKDDRKFEVNPMDLLKGHDLIMDRSSVSVDFDPAARKKAEEEKLAKWEAHGYNSLSVKDPPSHVDVDMISDSGSVDFVYGDCTLPSKVCPSEATIIFSCIDDSGIWGHGGMFDALARLSSSVPDAYQRASEFKDLHLGDLHFIKINEDCEEQRMDCNAPQWVALAVVQSYNPRRKVPRSNISVPDLECCLSKASFLAAQKSASIHMPRIGYQDRSEWYTVERLLRKYASLYGIKIFVYYFRRSS* | 833 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi15g00355 | 832 | PANTHER | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE | 32 | 611 | IPR031053 | GO:0003678(InterPro)|GO:0006281(InterPro)|GO:0006338(InterPro) | |
| Vivi15g00355 | 832 | CDD | Macro-Poa1p-like-SNF2 | 662 | 819 | - | - | |
| Vivi15g00355 | 832 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 368 | 537 | IPR001650 | - | |
| Vivi15g00355 | 832 | SMART | helicmild6 | 394 | 489 | IPR001650 | - | |
| Vivi15g00355 | 832 | Gene3D | Leucine Aminopeptidase, subunit E, domain 1 | 662 | 832 | IPR043472 | - | |
| Vivi15g00355 | 832 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 48 | 226 | IPR014001 | - | |
| Vivi15g00355 | 832 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 31 | 271 | IPR027417 | - | |
| Vivi15g00355 | 832 | Gene3D | - | 283 | 596 | IPR027417 | - | |
| Vivi15g00355 | 832 | FunFam | Putative helicase CHR10 | 282 | 593 | - | - | |
| Vivi15g00355 | 832 | SUPERFAMILY | Macro domain-like | 663 | 827 | IPR043472 | - | |
| Vivi15g00355 | 832 | Gene3D | - | 20 | 281 | IPR038718 | - | |
| Vivi15g00355 | 832 | Pfam | SNF2-related domain | 40 | 344 | IPR000330 | GO:0005524(InterPro)|GO:0140658(InterPro) | |
| Vivi15g00355 | 832 | SMART | ultradead3 | 33 | 234 | IPR014001 | - | |
| Vivi15g00355 | 832 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 169 | 533 | IPR027417 | - | |
| Vivi15g00355 | 832 | CDD | SF2-C-SNF | 357 | 500 | IPR049730 | - | |
| Vivi15g00355 | 832 | Pfam | Helicase conserved C-terminal domain | 365 | 489 | IPR001650 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi15g00355 | K20092 | chromodomain-helicase-DNA-binding protein 1-like [EC:5.6.2.-] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Vivi | Vivi-Chr15:13101371 | Vivi5g00350 | Vivi-Chr5:3495045 | dispersed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Vivi4g01164 | . | 331 | 380 | DDM1 gene family | AT5G66750 | 38.0 | 1.94e-07 | 50.8 | |
| Vivi17g00621 | . | 202 | 655 | DDM1 gene family | AT5G66750 | 23.701 | 1.76e-20 | 95.9 | |
| Vivi1g00131 | . | 570 | 735 | DDM1 gene family | AT5G66750 | 40.571 | 1.05e-25 | 113.0 | |
| Vivi2g00573 | . | 540 | 741 | DDM1 gene family | AT5G66750 | 31.884 | 1.86e-20 | 93.6 | |
| Vivi5g00271 | . | 201 | 667 | DDM1 gene family | AT5G66750 | 26.392 | 1.01e-29 | 123.0 | |
| Vivi5g00350 | . | 21 | 739 | DDM1 gene family | AT5G66750 | 38.728 | 2.51e-146 | 455.0 | |
| Vivi5g00371 | . | 197 | 729 | DDM1 gene family | AT5G66750 | 42.279 | 1.95e-118 | 393.0 | |
| Vivi5g00460 | . | 196 | 726 | DDM1 gene family | AT5G66750 | 44.134 | 6.17e-131 | 415.0 | |
| Vivi15g00355 | . | 202 | 681 | DDM1 gene family | AT5G66750 | 38.447 | 3.66e-97 | 318.0 | |
| Vivi4g00955 | . | 15 | 764 | DDM1 gene family | AT5G66750 | 69.327 | 0.0 | 1083.0 | |
| Vivi15g00015 | . | 202 | 719 | DDM1 gene family | AT5G66750 | 30.106 | 3.22e-66 | 239.0 | |
| Vivi12g00282 | . | 195 | 501 | DDM1 gene family | AT5G66750 | 30.564 | 2.63e-33 | 135.0 | |
| Vivi3g00003 | . | 330 | 655 | DDM1 gene family | AT5G66750 | 23.056 | 4.79e-14 | 74.3 | |
| Vivi6g00242 | . | 206 | 669 | DDM1 gene family | AT5G66750 | 25.104 | 1.10e-22 | 103.0 | |
| Vivi4g01332 | . | 158 | 661 | DDM1 gene family | AT5G66750 | 29.525 | 6.31e-65 | 233.0 | |
| Vivi15g00844 | . | 80 | 680 | DDM1 gene family | AT5G66750 | 33.704 | 9.91e-93 | 317.0 | |
| Vivi7g00580 | . | 194 | 677 | DDM1 gene family | AT5G66750 | 33.333 | 1.60e-71 | 252.0 | |
| Vivi3g00427 | . | 202 | 503 | DDM1 gene family | AT5G66750 | 28.165 | 2.21e-26 | 114.0 | |
| Vivi8g01486 | . | 71 | 519 | DDM1 gene family | AT5G66750 | 34.32 | 6.66e-74 | 261.0 | |
| Vivi8g01256 | . | 523 | 690 | DDM1 gene family | AT5G66750 | 34.524 | 1.12e-19 | 94.0 | |
| Vivi4g00521 | . | 196 | 724 | DDM1 gene family | AT5G66750 | 38.64 | 3.00e-101 | 339.0 | |
| Vivi6g01035 | . | 157 | 726 | DDM1 gene family | AT5G66750 | 38.617 | 1.17e-114 | 379.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Vivi | SNF2_N | 1.2e-46 | CL0023 | TR | SNF2 |