AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi15g00356 ATGCAGGCCAAACCTTTCCATGCTGTCCCGGTCAAATTCCCTTCTCCAACAAAGCTCCCTCTTCTCCAGAAACCTCCGGCCATGCCGGAGAAAGTACTGTCAAGAGCTATTTCCATTTCCACACCTGATACTAGGGTTTCAGATGTCTCGACCCCGAATTTGGATGACTCCATGGCTGCATTTTGGGATTATCAGTTTCTCTTTATGTCGCAACGCTCTGAAACAGATGGGTCTATTGCTTTACGCGTGGTTGATGGTGCAATTCCCGTTGATTTTCCTTCGGGTACGTATTTTCTAGCTGGGCCGGGTCTTTTTAGCGATGATCATGGGTCGACGGTCCATCCTTTGGATGGGCATGGGTATTTGAGGGCTTTTGCCATTAATGGACCGGGTAAAGAGGTCAAGTTCTCGGCTAGGTATGTGAAAACGGAGGCCCAGTTGGAGGAGCACGACCCGATGACCCGTGGGTGGCGATTCACGTACCGCGGCCCGTTTTCGGTATTGAAAGGAGGGAAGAAGGTGGGGAACAGGAAGGTGATGAAAAATGTGGCGAACACCAGCGTGTTGAAGTGGGGTGGACGGTTGATGTGCTTGTGGGAGGGTGGAGACCCCTATGAGATTGAATCTGGGACGCTGGATACGATCGGAAGGCTCGATATGATGGAGGGCTGTGATTCATTGCATGAAGGTGGCAGCCCCGGCAGTGATGCTTGGGATTTGGCTGCGGCGGCGTTGAAGCCAATTCTACATGGAGTGTTCAAGATGCCGGAGAAGCGGCCACTGTCGCATTATAAAATTGATGCTAAAAGAAATAGGCTTCTGATGATGTGGTGTAACGCAGAAGACATGTTGCTGCCTCGGAGCAATTTTACAATCTATGAATTTGATTCGAAAATGAAGGTGGTACAAAGGAAAGAGTTCAAGATTCCGGATCATTTGATGATCCATGATTGGGCTTTCACCGATTCTCATTATGTCTTGTTCTCCAATCGAATCAAGCTTGATATTCTAGGATCAATGGGGGCCTTAAGTGGACTATCACCAATGATATCAGCATTATCGGCAAACCCTAGTAAACCAACCTCTCCAATCTATCTCCTTCCTCGATTCTCTGACGACGTCACTGGAAATCGAGATTGGAGAGTTCCAATTGAAGTTCCTTCACAGTTATGGCTGATACATGTTGGCAATGCCTATGAGGAGAGGGACGAGAGAGGAAACTTCAACATTCAAATACATGCCAGTGCTTGCTCTTATCAATGGTTCAATTTCCACAAAATGTTTGGATATGATTGGCAAAGTAGGAAATTAGACCCTTGTGTTATGAATGTTCAACAAGGCCAAGAAGAATCACTTCCACACCTCATTCAAGTCTCCATCAACTTGGATGCCAATGGTACATCCAAGAATTGTAGTGTCGAACCTTTGAATCAATGGAACAAACCCTCCGACTTCCCCTCCATCAATCCATCTTCCTCCGGCATAAAAAACACATACATGTATGCGGCGGCCGCATCTGGTTCCCGCTCAACCTTGCCACATTTTCCTTTTGACACCATCGTTAAAGTAAATGTCCCTAACAAGTCGACTCATAGGTGGTCTACCGGTACTAGGAGGTTCATAGGTGAGCCCATCTTTGTTCCCAAGGGTATTGAAGAAGACGACGGTTACCTTCTGGTAGTCGAGTATGCAGTGTCAATACAAAGGTGTTACCTTGTCATATTGGATGCTAAGAGAATAGGAGAGATTGATGCACTTGTAGCAAGGCTTGAAGTCCCAAAACATTTGACTTTTCCCATTGGATTTCATGGCTTTTGGGCCCCCAAAGAGTAG 1833 46.7 MQAKPFHAVPVKFPSPTKLPLLQKPPAMPEKVLSRAISISTPDTRVSDVSTPNLDDSMAAFWDYQFLFMSQRSETDGSIALRVVDGAIPVDFPSGTYFLAGPGLFSDDHGSTVHPLDGHGYLRAFAINGPGKEVKFSARYVKTEAQLEEHDPMTRGWRFTYRGPFSVLKGGKKVGNRKVMKNVANTSVLKWGGRLMCLWEGGDPYEIESGTLDTIGRLDMMEGCDSLHEGGSPGSDAWDLAAAALKPILHGVFKMPEKRPLSHYKIDAKRNRLLMMWCNAEDMLLPRSNFTIYEFDSKMKVVQRKEFKIPDHLMIHDWAFTDSHYVLFSNRIKLDILGSMGALSGLSPMISALSANPSKPTSPIYLLPRFSDDVTGNRDWRVPIEVPSQLWLIHVGNAYEERDERGNFNIQIHASACSYQWFNFHKMFGYDWQSRKLDPCVMNVQQGQEESLPHLIQVSINLDANGTSKNCSVEPLNQWNKPSDFPSINPSSSGIKNTYMYAAAASGSRSTLPHFPFDTIVKVNVPNKSTHRWSTGTRRFIGEPIFVPKGIEEDDGYLLVVEYAVSIQRCYLVILDAKRIGEIDALVARLEVPKHLTFPIGFHGFWAPKE* 611
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi15g00356 610 PANTHER BETA-CAROTENE DIOXYGENASE 55 608 IPR004294 GO:0010436(PANTHER)|GO:0016121(PANTHER)|GO:0016702(InterPro)|GO:0045549(PANTHER)
Vivi15g00356 610 Pfam Retinal pigment epithelial membrane protein 69 608 IPR004294 GO:0016702(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi15g00356 K17912 9-cis-beta-carotene 9',10'-cleaving dioxygenase [EC:1.13.11.68]