AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi15g00385 ATGTGTATTAACTTCTTGAATGTTAAGGTTGAATATGATTTTTGCTTGAAACTCACTTTTTTTTCTGAGCGATTCTCTGTCCCAATTTTCTCAAGCCCATCGAATCACATTTTCTCACCTTCCAAACACACTCACTCTATCTATACAAACCCTAGCACTTGCTCTGTCGCTTTTGCGATGACGCATTCCTCTGCCGCCTTCGCGAACCAGATTCGGTTCTTGCTTCAGAGCTTGAACGAAGAAAACGCTGACCATGTTTTCGAGGAGCTCCGTGAGGTGGAAGCAATTTTTGCTTCATTATTCAAGTACATCTTTGATAGACCGAATTTCTGCACGATATTTTGCCAGTCACTAAGAAGTACAGCAATCAGTGAAAGATTTCTTGAAAATCTCTCTAATACCCTACACTTTTCAGCTTGTGAAAAAATTGGCATTGGTCTGGCTCTTTTGGATTCTGAACATCTTGAATTCAGAACGTGTGGTAAGAATTTCTGCATGGCTCAGATTGAGGAATTGTGTGCCAATCCTGTTCCCATGAAATCTGTTGAGCAAATTCAGAATATCATTATGTACCTCCATCAGGCTGAGGGCCTTTACCCGCTTTTAGATTCCTTTATACAGATGTTATCCTTAGTTCATTTGGAAAGGGGTGCCTCCTTTGTTTTAGCTCCATTGCTTTCAGATGAATTGCGCAAGGCAAACTTATTGGGAGATTTGGATTTGTTCTGTGAAAGCAGGGAAAATGATTTTGATGCTATTCTAGCAGAAATGGAGAAGGAAAGAAACGTGGACAACATTATGATGGAACTGGGTTATGGATGCACTGTTAATGCTTTGCAGTGCAAAGAGATTTTATGCCTTTTCTTACCACTGACTGAAGCCACCATTTCTAGATTACTCGGCACAGTTGCACGCACCCAAGCTGGTCTCGGGGACAATCAGAACACATTTGTTGAATCCCTCTCGGCCCTTGGTAGCAACAGTTTGTCCGAGCTGCCCTTATTGAGCTCCTGGAATATTGAAATCCTCATAGATTCAGTGAAGCAACTTGCTCCAGGGACCAACTGGATAGGTGTTATTGAAAAGCTAGATCACGAAGGATTCTATGTGCCAAATTATGATGCATTCTCTTTTTTGATGGCTGCTTATAGACATGCATGTCCGGATCAATTTCCACTGCATGCTATTTGTGGATCTGTTTGGAAGAATGTTCAAGGCCAGCTATCTTTTCTTAAATATGCTGTATCAGCACCACCAGAAATATTTACGTTTGCACATTCTGCAAGACAACTGGCATATGTTGATGCTGTGTATGGCCATAAATTCCAACTTGGGCATGCAAATCATGCATGGTTATGTCTTGACCTTTTGAGTGTGTTGTGTCAACTGGCTGAAAGAGGTCATGGTAGTTCTGTCCAATCAATGCTTGAGTATCCTCTAAAACACTATCCTGAAATCCTGCTTCTTGGACTTGCGCATATTAATACTGCATATAATGTCCTCCAATATGAAGTGTCTTCCATTGCTTTCCCCTTGATAGTTGGGAATTCCATGGGAAATGGTATGATTCTTCACCTCTGGCATGTTAATCCTGATCTTGTACTGCGGGGATTTGTAGATGTTCACATCATTGATCCAAACAACATGACTAGAATTTTGGATATCTGCAAGGAGCTAAAGATTCTATCACAAGTATTGGAATTAATTCCTTCTCCTTTCAGTATCAGACTTGCTGCCCTTGCTTCTCGACACGAACTTGTGGACCTTGAGAAGTGGTTGCCTGATAATTTAACCACATACAAAGATATTTTCTTTGAGGAGTGCCTTAAGTTCTTAAGGGAGATTCAATTTGGTGCAGCACAAGTTTCTTCCAGTTCTTTCCATCATTCTGGTGCCATCATGGATCTTTATTCAGAGACAAGTTCTACCTTCTTGAAGGTCCTTCATGCTCATACTGGCTTGGTTACCTCTAGCCAGCTTTCTGAAGAAATGGAAAGGCTGCATGTAACAATTATGCGTGCTAATCCTAAATTTCAGAGCTGTGGGGCTACGGATTCATCAATCTCTGATCGATATGCAGAGGATATTGAGGCAGAATCAAACTCCTACTTCCTTCAAATGTATTCTTGCCAGCTGACTGTTGATGCAGTTGTTTTAAAGCTTTCTCAATTCAAGGAGTCTTCTGAGAAAAGGGAACAATTAATTTATGAATGCATGATTGCAAATCTCTTTGAAGAATGCAAATTCTTCCCCAAGTATCCTGAGAGGCAGCTCAGAATTGCTGCAGTTCTTTTTGGTTCTGTGATCAGCCATCAACTTGTTACTCATCTTTCACTTGGGATCGCCCTGCGCTATGTGTTGGATGCAATGCGTAAACCTCCAGATGCAAAAATGTTTGTATTTGGAACCAAAGCCTTGGAGCAGTTTGCGGATCGTTTAGTGGAATGGCCACAGTATTGCAATCATATCTTACAAATATCTCATCTACGTAATACTCATCCAGATCTTGTTGCTTTTGTTGAACAAACTCTTGCAAGGGTTTCATCAGGGCATTTGGAATCAGATGGAGGCAACAATAGTGATGATCAACATCATGGTTCTACACAACTTACCTCTGTGAATATGGAGATGTCTGCATCGTCATTACAATCACTTGGAGCTAGCAGCATACAGCCTGGGCAGCCTTCTTCACTTCCACTTCAACATAGACTTCAAAGTTCTCTTGATGATAGGCATAAAGCATCTGTAACTTTATCTAACTCCACAAAACCACTTGTAGCTCCTGCTGGGGAGCCTTTGGTTGCTTCCTCGGGTGATGCAACTAGTATTGACAAGTCTCTGAATTCAATTAATGCTCCAGCCACTGTGTCTTCATCTCCTGGATCTATCCGTCCTCTCCGAGGGATTACTTCTACTAGGTTTGGCTCTGCTATGAACATTGAAACGCTTGTGGCTGCTTCAGAGAGAAGAGAAACTCCCATAGAGGCCCCAGCATTAGAGATTCAGGACAAAATATCATTTATAATTAATAATATTTCGGCTGCAAATGTTGAGGCTAAGGCAAAAGAATTTACTGAAATTTTTAAAGAGCAGTACTATCCTTGGTTTGCGCAGTATATGGTGATGAAAAGAGCAAGCATTGAGCCGAATTTTCATGATTTGTACTTGAAGTTCCTAGACAAAGTTAATTCAAAGGCCTTGAATAAGGAGATAGTCCAAGCCACTTATGAGAACTGCAGAGTTCTTTTGGGATCAGAGCTTATAAAATCAAGTTCAGAAGAGCGTTCACTGCTAAAGAATTTGGGTAGCTGGCTTGGGAAATTTACAATTGGTAGGAACCAAGTTCTGAAGGCCCGTGAGATAGATCCCAAATCATTGATCATAGAGGCATATGAGAAGGGGTTGATGATTGCTGTAATTCCATTTACCTCCAAGATCCTAGAACCTTGTCGGAACAGTATAGCATATCAACCTCCTAATCCCTGGACCATGGGTATTCTTGGATTACTTGCTGAGATCTATGTACTGCCAAATTTGAAAATGAACCTAAAGTTTGACATTGAGGTCCTGTTCAAGAACCTTGGTGTGGATATGAAAGACATAACACCAACTTCTCTCCTTGAAAACCGTCCAAGACAAATTGAAGGGAATCCTGATTTCTCTAACAAGGATATTGGGGCGTCCCATCCACCAATGATTTCTGAAGTTAAATCTGCAATAGTATCTACGCCAAATAAAGTTGAGTTACCTGTTGAGGTTGCCAGTCCTCACACTGGTGGGCACACACATTTGTTATCTCAGTATGCTGCTCCTTTTCATCTTCCTACTGGAACATTGATGGAGGATGAAAAGCTAGTAGCTCTACGCTTGTCTGATCAGCTACCTTCTGCTCAAGGACTGTTACAAGCCACCCCATCACAATTACCGTTTTCTGTTAGTCAGCCTACTACCCTAATACCTAATATTGGAACTCATGTTATCATCAACCAGAAGATTAGTGCTTTGGGCTTGCACTTGCATTTTCAGAGAGTTGCTCCAATTGCCATGGATAGAGCTATCAAAGAAATATTGAGTGGTATGGTTCAGCGGAGTGTTAATATAGCTTCTCAAACGACAAAGGAGCTTGTTCTAAAGGACTATGCCATGGAGTCAGATGAGGCACTCATATATAATGCAGCACATGCGATGGTATCAAATCTGGCAGGAAGTTTAGCTCATGTAACATGCAAGGAACCACTACGGGCTTCATTGGCAAGGCAACTGGGGAATTTGCTTCAGGGTTTGACTATCTCCAATGAACGTCTAGAACAAGCTGTACAACTTGTTACCAATGATAACCTTGATAAGGCCTGTGCAGAAATGGAACGAGCTGCAGCGGATATGGCTGTACAAACAATTGACAAGGAACTTGAGATACGACTTTCTTTAAGAAGGAAGCACAGAGAAGGTATTGGTTCCACTTTTTTTGATGGAAGCATGTATACACAAGGTTCTATGGCTGTTCTACCGGAGGCCCTGCGCCCTAAACCTGGCCACTTATCCCTTTCTCAGCAGCAGGTTTATGAGGGCTTTGTTCAGCTTCCTAGGCAAAATCAATCTAATGAAGGCTCAAACATGTTGCCTGCTGATTCAGCTCCACCTGGTGGTGCTGGCCAGTCTGTTTCACACGGTTCAGCGTTAGTACAACTTGACCCCACTATTTACTCATCTAGCCCTGGAAACTCAGGGCTCATGGCAGTTTCTCAGTCCTTGGATTTCGTCACTGAGGATCTGGAGTCTACTTCAGTTCAGCTCCTTAGTGCTTCCTCAACTCACATGGGAATGGGGGATGGTGTTATCAAGCACATTTCCGAAAATGATTCTGTTGTTGCTTCATTTCCTTCAACTGCTTCAGCCTCTGATTTGAGTTCTGTGGAACCATCCGATGCTGTGAAAGAATTGGTAACTGCTTCACAATCATTTCCTTCAACTGTTGCCTCCGAGCGCCTTGGAATTAGTATCTCAGAACCTTTGGTCACAAGGGATGCATTGGATAAGTATCAAATTGTTGCAGAAAAGCTGGAAACTTTAGTAACTAATGGTGCTAGTGAATCAGAGCTTCAGGGCCTTGTTGCTGAAGTTCCTGAAATTATACACCGATGTGCTAGTCGAGATGAGGCTGCTTTGGCTGTGGCTCAAAAGGTTTTTAAGGGTCTGTATGCCGATGCATCAAACAGTTCTAATGTTGCTGCTTATCTTGCAATTCTGGTTGCCATTCGTGATCTTTGCAAGCTTGTTGTTAAGGAGCTCACTAGTTGGGTGATTTACTCAGATGAGGAGCGCAAATTCAACAAAGATATTATTATTAGCCTTATTCGCAGTGAATTGCTGAACCTTGCTGAGTATAATGTTCATATGGCAAAACTTGTTGATGGAGGAAGGAATAAAGCTGCAACAGAGTTTGCCTTTTCTCTTCTCCAAACTTTGGTGATTGAAGAACGTGGAGTCATTTCAGAACTTCCCAATCTTGTTGATGCAATGGCAAAGATTGCGAGTAAGCCTGGATCTCCTGAGTCATTGCAACAATTGATTGAGATTGTCAAGAGTCCTGTTGCTAATATGGATGCTCTATCTGTTAATTCTCTTGGAAAGGAGGATAAGACAAGACAATCTAGAGACAAGAAGGCTCCTATCCACTCTGCAGCCACCAGGGAAGAACATAACAATGGAGAACCTGTGGAACAAGATCCTACTGGTTTTCGTGAGCAGGTTTCCAAGCTGTTTGTGGAATGGTACCGCATATGTGAACTTCCTGGTACAAATGATGCAGCTTGTGCACATTACGTCTTGCAGTTGCATCAAAATGGACTGCTGAAAGGAGAACATATATCTGATCGCTTTTTCCACCTGCTTATGGAAATTTCTTTTTCACATTGTCTTTCTTCTGAGGCAATCATTACTGGTCCACTACAATCACATCAGCAAGTGCATAGCATGTCCTTCTTTGCCATTGATATCTTTTCAAATCTTGTGTTTTCAATCCTGAAGTATTCTCCCGTGGACCAGGGATTCAGTAAATTCAATCTCATTTCCAAGATTCTGGCAGTAACCGTGAGATTTATTCAAAAAGATGCTGAGGAGAAGAAAACATCTTTTAATCCAAGACCGTATTTCAGATTTTTCATTAATTGGCTATCAGAACTTGGTTCCCCTGATCCTGTCTTTGATGGTGCAAACTTTCAGGTTTTGATAACCTTCGCTAATGCATTTCATGCTTTGCAACCCCTCAAAATTCCTGCATTCAGCTTTGCATGGCTTGAGCTGGTGAGTCACAGGAGTTTCATGCCGAAATTGCTAACAGGAAACCCTTCAAAGGGTTGGCCTTATCTTCATCGGTTGTTGGTGGACTTGTTCCAATTCATGGAGCCATTCTTGAGAAATGCCATACTAGGAGAGCCGGTTCATTTTCTGTATAGAGGCACACTTAGGGTGCTGTTAATGCTACTTCATGATTTCCCGGAGTTTCTATGTGGCTATCATTTTACCTTCTGTGATGTGATCCCTCCAAGCTGCATACAGATGCGAAACATTATCCTTAGTGCATTTCCCCGAAATATGAGGCTTCCAGATCCATCTACTCCCAATTTAAAGATAGATTTGCTGGTGGAGATCAATCAGTCCCCACTTATTCTCTCAGATGTTGATGCGTCTCTTAAGGTGAAGCAGATGAAGACCGATGTAGATGAGTATCTCAAGATGGGGCAACAGGGGTCGTCATTTCTCAGTGGAATGAAGCAAAGACTGCTGCTTCTGCCAATTGATGCTGCTCGTGCTGGAACCCGTTATAATATACCCTTGATCAATTCCCTTGTACTTTATGTTGGAATGCAGGCTATGCAGCAGCTGAAAGCAAGAACACCACCTCATGTGCAGCCAATGGCCAGCAGCCCATTGGCTGGCTTCTTGGTGAGTGCTGCCTTGGATATTTTTCAGACTCTACTAGCAGAACTGGACACTGAAGGACGCTACCTCTTTCTGAATGCGGTTGCTAACCAACTACGTTATCCAAATACCCATACACACTACTTCTCCTTCATTCTTCTTTACTTGTTTGCGGAATCAAACCAGGAAATCATTCCAGAGCAGATCACTAGAGTGTTGTTGGAACGCCTTATTGTCAGTCGACCTCATCCATGGGGTCTTCTGATTACCTTCATTGAGCTCATCAAGAACCCTAGATACAATTTTTGGAACCGGACCTTCATAAGCTGTGCACCAGAGATCGAGAAGCTCTTTGAATCAGTCTCAAGATCATGTGGGGGTGCAAACCCCTTGGATGAGAGTACCGTCTCGGGTGGATTTTCTGAAAATATGCACTGA 7359 42.23 MCINFLNVKVEYDFCLKLTFFSERFSVPIFSSPSNHIFSPSKHTHSIYTNPSTCSVAFAMTHSSAAFANQIRFLLQSLNEENADHVFEELREVEAIFASLFKYIFDRPNFCTIFCQSLRSTAISERFLENLSNTLHFSACEKIGIGLALLDSEHLEFRTCGKNFCMAQIEELCANPVPMKSVEQIQNIIMYLHQAEGLYPLLDSFIQMLSLVHLERGASFVLAPLLSDELRKANLLGDLDLFCESRENDFDAILAEMEKERNVDNIMMELGYGCTVNALQCKEILCLFLPLTEATISRLLGTVARTQAGLGDNQNTFVESLSALGSNSLSELPLLSSWNIEILIDSVKQLAPGTNWIGVIEKLDHEGFYVPNYDAFSFLMAAYRHACPDQFPLHAICGSVWKNVQGQLSFLKYAVSAPPEIFTFAHSARQLAYVDAVYGHKFQLGHANHAWLCLDLLSVLCQLAERGHGSSVQSMLEYPLKHYPEILLLGLAHINTAYNVLQYEVSSIAFPLIVGNSMGNGMILHLWHVNPDLVLRGFVDVHIIDPNNMTRILDICKELKILSQVLELIPSPFSIRLAALASRHELVDLEKWLPDNLTTYKDIFFEECLKFLREIQFGAAQVSSSSFHHSGAIMDLYSETSSTFLKVLHAHTGLVTSSQLSEEMERLHVTIMRANPKFQSCGATDSSISDRYAEDIEAESNSYFLQMYSCQLTVDAVVLKLSQFKESSEKREQLIYECMIANLFEECKFFPKYPERQLRIAAVLFGSVISHQLVTHLSLGIALRYVLDAMRKPPDAKMFVFGTKALEQFADRLVEWPQYCNHILQISHLRNTHPDLVAFVEQTLARVSSGHLESDGGNNSDDQHHGSTQLTSVNMEMSASSLQSLGASSIQPGQPSSLPLQHRLQSSLDDRHKASVTLSNSTKPLVAPAGEPLVASSGDATSIDKSLNSINAPATVSSSPGSIRPLRGITSTRFGSAMNIETLVAASERRETPIEAPALEIQDKISFIINNISAANVEAKAKEFTEIFKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNKEIVQATYENCRVLLGSELIKSSSEERSLLKNLGSWLGKFTIGRNQVLKAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCRNSIAYQPPNPWTMGILGLLAEIYVLPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLENRPRQIEGNPDFSNKDIGASHPPMISEVKSAIVSTPNKVELPVEVASPHTGGHTHLLSQYAAPFHLPTGTLMEDEKLVALRLSDQLPSAQGLLQATPSQLPFSVSQPTTLIPNIGTHVIINQKISALGLHLHFQRVAPIAMDRAIKEILSGMVQRSVNIASQTTKELVLKDYAMESDEALIYNAAHAMVSNLAGSLAHVTCKEPLRASLARQLGNLLQGLTISNERLEQAVQLVTNDNLDKACAEMERAAADMAVQTIDKELEIRLSLRRKHREGIGSTFFDGSMYTQGSMAVLPEALRPKPGHLSLSQQQVYEGFVQLPRQNQSNEGSNMLPADSAPPGGAGQSVSHGSALVQLDPTIYSSSPGNSGLMAVSQSLDFVTEDLESTSVQLLSASSTHMGMGDGVIKHISENDSVVASFPSTASASDLSSVEPSDAVKELVTASQSFPSTVASERLGISISEPLVTRDALDKYQIVAEKLETLVTNGASESELQGLVAEVPEIIHRCASRDEAALAVAQKVFKGLYADASNSSNVAAYLAILVAIRDLCKLVVKELTSWVIYSDEERKFNKDIIISLIRSELLNLAEYNVHMAKLVDGGRNKAATEFAFSLLQTLVIEERGVISELPNLVDAMAKIASKPGSPESLQQLIEIVKSPVANMDALSVNSLGKEDKTRQSRDKKAPIHSAATREEHNNGEPVEQDPTGFREQVSKLFVEWYRICELPGTNDAACAHYVLQLHQNGLLKGEHISDRFFHLLMEISFSHCLSSEAIITGPLQSHQQVHSMSFFAIDIFSNLVFSILKYSPVDQGFSKFNLISKILAVTVRFIQKDAEEKKTSFNPRPYFRFFINWLSELGSPDPVFDGANFQVLITFANAFHALQPLKIPAFSFAWLELVSHRSFMPKLLTGNPSKGWPYLHRLLVDLFQFMEPFLRNAILGEPVHFLYRGTLRVLLMLLHDFPEFLCGYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLVEINQSPLILSDVDASLKVKQMKTDVDEYLKMGQQGSSFLSGMKQRLLLLPIDAARAGTRYNIPLINSLVLYVGMQAMQQLKARTPPHVQPMASSPLAGFLVSAALDIFQTLLAELDTEGRYLFLNAVANQLRYPNTHTHYFSFILLYLFAESNQEIIPEQITRVLLERLIVSRPHPWGLLITFIELIKNPRYNFWNRTFISCAPEIEKLFESVSRSCGGANPLDESTVSGGFSENMH* 2453
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi15g00385 2452 Gene3D - 2202 2433 - -
Vivi15g00385 2452 FunFam Transcription regulator 682 850 - -
Vivi15g00385 2452 FunFam CCR4-NOT transcription complex subunit 1 2198 2427 - -
Vivi15g00385 2452 Pfam CCR4-NOT transcription complex subunit 1 CAF1-binding domain 994 1214 IPR032191 -
Vivi15g00385 2452 Gene3D - 681 849 IPR038535 -
Vivi15g00385 2452 MobiDBLite consensus disorder prediction 1878 1905 - -
Vivi15g00385 2452 MobiDBLite consensus disorder prediction 1875 1910 - -
Vivi15g00385 2452 Pfam CCR4-NOT transcription complex subunit 1 HEAT repeat 504 648 IPR032194 -
Vivi15g00385 2452 MobiDBLite consensus disorder prediction 881 911 - -
Vivi15g00385 2452 Gene3D - 969 1216 - -
Vivi15g00385 2452 Gene3D - 1903 2201 - -
Vivi15g00385 2452 Pfam CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819 1340 1481 IPR024557 -
Vivi15g00385 2452 MobiDBLite consensus disorder prediction 881 904 - -
Vivi15g00385 2452 Pfam CCR4-NOT transcription complex subunit 1 TTP binding domain 670 848 IPR032193 -
Vivi15g00385 2452 Pfam CCR4-Not complex component, Not1 2067 2428 IPR007196 -
Vivi15g00385 2452 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX 65 2434 IPR040398 GO:0000288(PANTHER)|GO:0000932(PANTHER)|GO:0017148(InterPro)|GO:0030015(PANTHER)|GO:0030015(InterPro)|GO:0060090(PANTHER)
Vivi15g00385 2452 MobiDBLite consensus disorder prediction 1531 1556 - -
Vivi15g00385 2452 FunFam Ccr4-Not transcription complex subunit 968 1215 - -
Vivi15g00385 2452 FunFam Transcription regulator 1902 2201 - -
Vivi15g00385 2452 CDD NOT1-connector 1670 1861 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi15g00385 K12604 CCR4-NOT transcription complex subunit 1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr15:13514010 Vivi16g00383 Vivi-Chr16:10551996 dispersed