AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi15g00396 ATGGCGTCTCCTCCATTGCAGGTGGAGGATCAGACGGATGAGGATTTTTTCAATCAATTGGTTGATGATGAGATTGATTCTACTCGATCTGGCCCTGGTATTGTAGAAGGTGATGATGCGGATGAGGCAAAAGTGTTTAGGAATCCAAGTATTAGTGAAGGTAATGGAGATGGCGCCGTGTCCACATTATCGGATACTGGGGAGGACGCTTTGGTTACGTCATCAAAATTTGTGACACCCGGTACTGTGATTGAATCTGGTGATGAAGCAGTGGGGGAAGAAAGTTTACCGAGTACTAGCATTGGTGAGAATAGCGGGTCTTCGGGAAGAGGTGTTAAAGTGGTACAATGGAGTTCGTTCAACTCAGATTCTCATCTTCAGGGTGGCATCATAGATCCATTTGATAATGCAGTAAACCAAGAGAGTTCTGGGGCTGAATTCAATAACATGAGCAGTGTTTCAGGAAACCCAGTTGAGGATTTGAGTTCCTTGAATTCCACACAACATCAAGAAAGCCAAAACTATGGGGTGGCTAGGGAGCAGGCAGTAGATGGGCAGGATTTGAATAGTAGTCAGCACTGGGAAGAGCTCTATCCAGGGTGGAGATATGATCCAAGGACTGGAGAATGGCATCAGTTAGAAGGTTATGATGCAAATGCTAGTATGAATGCTCAGATAGCAGGTGATGGGATTGTTTCAAACCAGAGATCCGATGCTCACTATTTTCAGCAAACCACACAGTCTCTTTCCATCATGGGAAGTGTGGCTGAAGAATGTACAGGTGGTAGTGTACCTAATTGGAATCAGATTTCACAAGGTAATGTGGAATACCCAGCACACATGGTGTTTGATCCACAGTATCCTGGTTGGTACTATGACACAATTGCCCTAGAATGGAGGTTGTTAGAGTCTTATAATCCATCTGTAAATCACTCAATGACTGTCAATAATAACCAGCAAAATCAAACTGGAAGTGTTTTGTCAGGTAATTTCTTCACCAACAAGAGTCATACCATCCATGAGCAAGTTGAAAATTATGGATTGAAAGGCCTCAGTGGTCAAAGCCAAGTTGCAGATTGGGATGGATCTGCGAGTGATTACTGTCAGCAACAGAAGAATATTTGGCAATCTGAGACAGTTTCTGAGAGTGATGCAATTGTTTTTACTGCAAAACAGCAAATGCAGAATCTCTATGGTTCACAATTTCATGTGAACAATTTTTCTAATCAACAAACAGGGTTTCAAAGCTTTACTCCTGGTGAAAACCTTTCTCGACACCATAATCAGACGAATATGGATCTAAGCCAACAGATGCAATTTTCTCCTGCTTACTTTGATGGACAAAAATCAGTAAATTTACCACAGCAGCCACATCAGAGTGACACACAGTTCTCTTATGCTCCCAAAGAGCGTTGGTCATCTGCTGGACGACCTCCACATCCATTGGTTACTTTTGGGTTTGGTGGAAAACTCCTAGTTATGAAAGATAACGGTTCTTTTCTAACAAACTCTTCATATGGACACCAGGACTCAGCAGGAGGTGTGGTTAATGTTCTCAACTTGATGGATGTTGTTGTGGGCAAAAATGATTCTTTGTGCACTGGAACTGGTGGTCGTGATTATTTCCATATATTATCGCATCAATCTTTTCCTGGACCTCTGGTCGGAGGGAATGTTGGAAGCAGAGAGTTGAATAAATGGGTTGATGAGAAGATTGCAAAATGTGAATCTTCAAACATGGACTATAGAAAAGGCGAGGTCCTGAGGTTGCTTTTCTCTTTGCTGAAAATAGCATGCCAGTATTATGGGAAACTCCGTTCTCCCTTTGGCACTGACCAAGCATTGAAGGAAAGTGATTCTCCTGAATCTGCTGTAGCTAAGCTCTTTTCATATGCTAAAAGAAATGGTGTGCAACATAGTGAGTATGGCACTCTTACACGATGCTTGCAGAACTTGCCTTCCGAAGCACAGATTCAGGCTACTGCTCTTGAAGTACAGAAGCTTCTTGTCTCTGGTAGAAAAAAGGAGGCTTTAGGATGTGCAATAGAAGGTCAATTATGGGGACCTGCACTTGTTCTGGCTGCTCAACTTGGTGATCAGTTTTATGGTGATACCGTGAAGCAAATGGCACTTCAGCAGTTAGTTGCAGGATCACCTTTGCGGACGTTGTGCCTGTTAATTGCAGGGCAGCCAGCAGATGTCTTTTCCAATACTGCAAATATATCTCAACAGTCTGGCCAGATATGGGCTGGGGCAAACAGTATGCTAGATGAATGGGAAGAGAATTTGGCCATAATAACTGCTAACAGAACAAAAGATGATGAGCTTGTTATTATTCATCTTGGTGATTGCCTATGGAAGGAGAGGGGTGAGATTGCTGCTGCCCACATCTGTTACTTAGTTGCTGAAGCAAACTTTGAGTCATATTCAGACAGTGCAAGACTATGTCTTATTGGTGCAGATCATTGGAAATTCCCCCGAACATATGCTAGTCCAGAGGCTATTCAGAGGACAGAATTCTATGAATATTCAAAGGTGCTTGGCAATTCTCAGTTTATCCTACTACCTTTTCAGCCTTATAAGATTATTTATGCCCACATGCTGGCTGAAGTGGGAAAAGTTTCAGATTCTTTAAAGTACTGTCAGGCAATTTTGAAATCTCTAAAAACTGGACGAGCACCTGAAGTGGAAACATGGAAACTGTTAGTATCATCTCTTGACGAGCGGATAAGAACCCATCAGCAGGGTGGTTACTCAACTAATTTGGCTCCAACAAAACTGGTGGGTAAATTGCTGACTTTATTTGATAGTACTGCTCATCGTGTTGTTGGAGGTCTTCCCCCTCCTGTACCATCAGCATCACATGGCAATGTTCGACGTAGTGAACAAGTTAACCAGCCTGGAGGCCCAAGGGTATCGAACAGTCAATCGACGATGGCGATGTCTTCATTAATGCCTTCGGCATCAATGGAACCTATAAGTGACTGGATGGGTGAGGGCAATCGACTGACAAAGCCTAATAGAAGCATTTCGGAGCCAGACTTTGGAAGAACTCCAAGAAAGGTTGATTCATCCAAGGAAGCCTCTCCTGATATAAAAGCATCCAGTTCGGGGGCACCTTCTCGTTTTGGCCGTTTTGGCTCACAAATATTCCAAAAGACTGTGGGGTTGGTCTTAAGATCCCGCCCTGACCGGCAGGCAAAACTAGGTGAGAAGAATAAATTTTATTATGATGAAAAGCTCAAGCGATGGGTTGAGGAAGGTACTGAACTTCCATCTGAAGAAGCAGCCTTGCCGCCCCCACCACCAACTTCAGTTTTCCAGAACGGAATGCCAGATAGCAGCATGAAAGATGCAGCCAAAGTTGAAAACTCAGAGAGTAATGGTGGGCCAGAAATCAAAAGCCCAAATTCTTCTGAACGGGGTTCTGGGATCCCACCTATCCCACCCTCTTCAAATCAGTTCTCTGCTCGTGGGCGCATGGGTGTTCGCTCAAGGTATGTTGACACATTCAACAAGGGTGGTGGGACAGCAACAAACTTGTTCCAGTCACCTTCAATTCCATCCCCAAAACCTGGAATTGTTTCCAACCCCAAGTTTTTCATCCCCACTCCAATAGCCTCGGGAGAAGAAACAATACAAACCACTAGAGAAAGCATTCAAGAAGCCACAGGAACCAATGAAAATCTTTCTAGATCTGTTAAGAACGATGGATTTGCACCTCCACCAACATCAACATCATCATCAATGGCTATGCAACGGCATCCTAGCATGAATGACATCTTATACAACAGTATGGGAACCACGGCAAAATCCAACCCCTCTGTTATTCCTCACTCCCGCCGAACAGCATCATGGAGTGGAACCTTTAGTGATTCTATAAGTCAGTCTATAAGGACTGATGTAAAACCGCTAGGAGAAGTACTTGGTATGAACCCGTCACAATATCTGCCCAGTAACTCTTCGCCAATGCGGTTTTCAGTGAGTGGCAATAGTATTGGGGATGATCTGCATGAAGTTGAACTTTGA 4029 43.66 MASPPLQVEDQTDEDFFNQLVDDEIDSTRSGPGIVEGDDADEAKVFRNPSISEGNGDGAVSTLSDTGEDALVTSSKFVTPGTVIESGDEAVGEESLPSTSIGENSGSSGRGVKVVQWSSFNSDSHLQGGIIDPFDNAVNQESSGAEFNNMSSVSGNPVEDLSSLNSTQHQESQNYGVAREQAVDGQDLNSSQHWEELYPGWRYDPRTGEWHQLEGYDANASMNAQIAGDGIVSNQRSDAHYFQQTTQSLSIMGSVAEECTGGSVPNWNQISQGNVEYPAHMVFDPQYPGWYYDTIALEWRLLESYNPSVNHSMTVNNNQQNQTGSVLSGNFFTNKSHTIHEQVENYGLKGLSGQSQVADWDGSASDYCQQQKNIWQSETVSESDAIVFTAKQQMQNLYGSQFHVNNFSNQQTGFQSFTPGENLSRHHNQTNMDLSQQMQFSPAYFDGQKSVNLPQQPHQSDTQFSYAPKERWSSAGRPPHPLVTFGFGGKLLVMKDNGSFLTNSSYGHQDSAGGVVNVLNLMDVVVGKNDSLCTGTGGRDYFHILSHQSFPGPLVGGNVGSRELNKWVDEKIAKCESSNMDYRKGEVLRLLFSLLKIACQYYGKLRSPFGTDQALKESDSPESAVAKLFSYAKRNGVQHSEYGTLTRCLQNLPSEAQIQATALEVQKLLVSGRKKEALGCAIEGQLWGPALVLAAQLGDQFYGDTVKQMALQQLVAGSPLRTLCLLIAGQPADVFSNTANISQQSGQIWAGANSMLDEWEENLAIITANRTKDDELVIIHLGDCLWKERGEIAAAHICYLVAEANFESYSDSARLCLIGADHWKFPRTYASPEAIQRTEFYEYSKVLGNSQFILLPFQPYKIIYAHMLAEVGKVSDSLKYCQAILKSLKTGRAPEVETWKLLVSSLDERIRTHQQGGYSTNLAPTKLVGKLLTLFDSTAHRVVGGLPPPVPSASHGNVRRSEQVNQPGGPRVSNSQSTMAMSSLMPSASMEPISDWMGEGNRLTKPNRSISEPDFGRTPRKVDSSKEASPDIKASSSGAPSRFGRFGSQIFQKTVGLVLRSRPDRQAKLGEKNKFYYDEKLKRWVEEGTELPSEEAALPPPPPTSVFQNGMPDSSMKDAAKVENSESNGGPEIKSPNSSERGSGIPPIPPSSNQFSARGRMGVRSRYVDTFNKGGGTATNLFQSPSIPSPKPGIVSNPKFFIPTPIASGEETIQTTRESIQEATGTNENLSRSVKNDGFAPPPTSTSSSMAMQRHPSMNDILYNSMGTTAKSNPSVIPHSRRTASWSGTFSDSISQSIRTDVKPLGEVLGMNPSQYLPSNSSPMRFSVSGNSIGDDLHEVEL* 1343
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi15g00396 1342 MobiDBLite consensus disorder prediction 1128 1158 - -
Vivi15g00396 1342 MobiDBLite consensus disorder prediction 150 175 - -
Vivi15g00396 1342 PANTHER RGPR-RELATED 1 1307 IPR024880 GO:0006914(InterPro)|GO:0007030(PANTHER)|GO:0012507(PANTHER)|GO:0048208(InterPro)|GO:0070971(PANTHER)|GO:0070973(PANTHER)
Vivi15g00396 1342 Pfam Vesicle coat trafficking protein Sec16 mid-region 480 603 IPR024340 -
Vivi15g00396 1342 MobiDBLite consensus disorder prediction 1091 1158 - -
Vivi15g00396 1342 MobiDBLite consensus disorder prediction 83 109 - -
Vivi15g00396 1342 MobiDBLite consensus disorder prediction 956 976 - -
Vivi15g00396 1342 CDD ACE1-Sec16-like 550 914 - -
Vivi15g00396 1342 MobiDBLite consensus disorder prediction 1014 1028 - -
Vivi15g00396 1342 MobiDBLite consensus disorder prediction 1224 1252 - -
Vivi15g00396 1342 Gene3D - 467 897 - -
Vivi15g00396 1342 MobiDBLite consensus disorder prediction 1269 1288 - -
Vivi15g00396 1342 MobiDBLite consensus disorder prediction 454 469 - -
Vivi15g00396 1342 Pfam Sec23-binding domain of Sec16 665 924 IPR024298 -
Vivi15g00396 1342 MobiDBLite consensus disorder prediction 454 477 - -
Vivi15g00396 1342 MobiDBLite consensus disorder prediction 995 1045 - -
Vivi15g00396 1342 MobiDBLite consensus disorder prediction 946 976 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi15g00396 K20353 COPII coat assembly protein SEC16
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr15:13775360 Vivi5g00880 Vivi-Chr5:13494305 dispersed