AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi15g00414 ATGAAATTCGGGAAGAGATTGAAGCAACAAATTCAGGAAACGTTGCCTGATTGGCGCGATAAATTCCTGGCCTACAAGGATTTGAAGAAGCTGGTGAAGTTGGTTTCGTCTCCTCCGGCGGTGGCGAATGGATCGGCGGCGAAAGCCGAGGCTGAGTTTGTGTACTTGTTGAATAATGAGATCGAGAAGTTTAATGCATTTTTCATGGAGCAGGAGGAGGATTTCATTATCAGGAATAAGGAATTACAACAGAGGATCCAGAGGGTGATCGATAAATGGGGGCTCAATGGCAGCCACCCTTCAGACACAAACTATAGAGAGGAAATGGGAAAGATCAGAAAAGATATAGTTGATTTCCATGGCGAAATGGTACTCCTAGAGAACTACAGCAATATCAATTACACAGGCTTGGCTAAGATCTTGAAGAAGTATGACAAAAGAACTGGTGGGCTGTTGCGCTTGCCCTTCATTCAGAAGGTGTTACAGCAGCCTTTCTTTACAACTGACCTTGTCTCAAAGCTGGTCAAGGAATGTGAAAGCACCATAGATGCAGTGTTCCCAGCTGCGAAAGAAGAAGGTGGTGTCCATGAAAGAGAACAAGAAGCAATAACAGTGGTTGGTGAAGGAATTTTCAGGAACACAGTTGCAGCACTATTGACGTTGCAGGAGATAAGAAGAGGAAGCTCCACCTACAGTCACTTCTCTCTGCCTCCTCTCATTTTGCCAGACCCTGATCTCATTCAATCCATTCAATTCCACTCTCCCATCCCCATTGTCTGA 780 45.0 MKFGKRLKQQIQETLPDWRDKFLAYKDLKKLVKLVSSPPAVANGSAAKAEAEFVYLLNNEIEKFNAFFMEQEEDFIIRNKELQQRIQRVIDKWGLNGSHPSDTNYREEMGKIRKDIVDFHGEMVLLENYSNINYTGLAKILKKYDKRTGGLLRLPFIQKVLQQPFFTTDLVSKLVKECESTIDAVFPAAKEEGGVHEREQEAITVVGEGIFRNTVAALLTLQEIRRGSSTYSHFSLPPLILPDPDLIQSIQFHSPIPIV* 260
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi15g00414 259 PANTHER SPX DOMAIN-CONTAINING PROTEIN 3 1 243 IPR031142 GO:0016036(InterPro)
Vivi15g00414 259 Pfam SPX domain 1 36 IPR004331 -
Vivi15g00414 259 Pfam SPX domain 100 159 IPR004331 -
Vivi15g00414 259 ProSiteProfiles SPX domain profile. 1 158 IPR004331 -
Vivi15g00414 259 CDD SPX-AtSPX1-like 2 147 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi15g00414 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr11:4657020 Vivi15g00414 Vivi-Chr15:14297501 dispersed
Vivi Vivi-Chr14:29765355 Vivi15g00414 Vivi-Chr15:14297501 dispersed
Vivi Vivi-Chr15:14297501 Vivi9g00534 Vivi-Chr9:6631424 dispersed
Vivi Vivi-Chr15:14297501 Vivi4g00476 Vivi-Chr4:4847963 transposed