AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi15g00416 ATGAGCACTGGAGAGCTCCTCAGTATCGAACCTCAAGAACTTCAGTTCCCTTTTGAATTGAGGAAGCAGATCTCGTGTTCTCTGCAACTTTCGAATAAGACCGATAATTTTGTCGCTTTCAAGGTTAAGACCACAAATCCTAAGAAGTATTGTGTTAGGCCTAACACTGGAGTTGTGATGCCTCGCAGCACATGTGATGTAATAGTTACAATGCAAGCGCAGCGGGAGACGCCTCAGGATATGCAATGCAAGGATAAGTTTCTCCTTCAGAGCGCAATTGCAAGTCCTGGAGCTACCGCTAAGGACATTACTTCAGATATGTTCAATAAGGAAGCAGGGAATCGTGTTGAGGAGTGCAAATTGAGGGTTGCTTATGTTCCTCCACCACAGCCACCATCCCCAGTGAGAGAGGGATCAGAGGAAGGCTCTTCCCCTAGAGCTTCAGTATCAGACAATGGGAACATCAATGCTTCTGAATTCACTGCAGTCTCAAGAGCATATGTTGAGCCTCAAGATAACTCATCCGAGGCAAGGGCTCTTATTTCAAAGCTGACCGAGGAGAAAAAATCTGCTATTCAACAAAACAACAAGCTTCAGCAAGAATTGGAGTTCCTTAGGCGTGAAAGCAACAGAAGTCGCAATGGCAGTCTCTCATTTATATATTTTATTCTCGTTGGTTTGCTTGGCCTCCTTATGGGCTATCTTATGAAGATGACATGA 720 44.58 MSTGELLSIEPQELQFPFELRKQISCSLQLSNKTDNFVAFKVKTTNPKKYCVRPNTGVVMPRSTCDVIVTMQAQRETPQDMQCKDKFLLQSAIASPGATAKDITSDMFNKEAGNRVEECKLRVAYVPPPQPPSPVREGSEEGSSPRASVSDNGNINASEFTAVSRAYVEPQDNSSEARALISKLTEEKKSAIQQNNKLQQELEFLRRESNRSRNGSLSFIYFILVGLLGLLMGYLMKMT* 240
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi15g00416 239 MobiDBLite consensus disorder prediction 125 154 - -
Vivi15g00416 239 Gene3D Immunoglobulins 2 130 IPR013783 -
Vivi15g00416 239 FunFam Vesicle-associated protein 1-1 1 129 - -
Vivi15g00416 239 Coils Coil 174 215 - -
Vivi15g00416 239 ProSiteProfiles Major sperm protein (MSP) domain profile. 6 126 IPR000535 -
Vivi15g00416 239 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 6 236 IPR016763 GO:0005789(InterPro)|GO:0005789(PANTHER)|GO:0005886(PANTHER)|GO:0061817(PANTHER)|GO:0090158(PANTHER)
Vivi15g00416 239 Pfam MSP (Major sperm protein) domain 7 112 IPR000535 -
Vivi15g00416 239 PIRSF VAMP-assoc-prot 1 238 IPR016763 GO:0005789(InterPro)
Vivi15g00416 239 SUPERFAMILY PapD-like 2 141 IPR008962 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi15g00416 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr15:14748550 Vivi15g00416 Vivi-Chr15:14343591 transposed
Vivi Vivi-Chr5:3685000 Vivi15g00416 Vivi-Chr15:14343591 transposed
Vivi Vivi-Chr15:14343591 Vivi2g00534 Vivi-Chr2:5258569 wgd