AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi15g00435 ATGGAAGAGGCCACTAATCAGACTCCAGAAGCAATGGAAGCCCTGATATCCAAGATTTTTATGAACATCTCCTCCCTAAAGTCAGCTTATATTCAGCTCCAAGCTGCTCATACTCCTTATGAACCTGATAAAATCCAAGCTGCTGATAAACTTGTGATTTCAGAACTGAAGAACCTTTCTGAACTCAAGCATTTTTACAGGGAGAAAAACCCCAAACCTATATGCTCTGTGGAAGAAAATGGATTCTTCCCAGTGGATTTAACCCCTGATCTGTTCATTTCGGTTGTAGAAGCTGCTTTTAAAGCAATTCATGATTTTTCTAAGCCATTGATCAACATGATGAAAGCAGCTGGATGGGACCTTGATGCTGCTGCAAATTCCATTGAACCTAATGTTGTTTATGCAAAGAGAGCTCACAAGAAATATGCATTTGAATCCCATATATGCCAGAGAATGTTCAGTGGTTTTCAGCATGAAAGCTTCTCCATCAAATCAGACAATCTTACTCGGAACTATGTAATGGGAGGTGGGCATCCAAGGACACCCTTCTACCAGGCTTTTCTGAAACTAGCCAAGTCTATCTGGCTTTTGCACCGGTTGGCTTATAGTTTCGATCCTAATGTTAAGGTCTTTCAGGTGAAGAGGGGGAGTGAATTCTCAGAGGTCTATATGGAAAGCGTAGTGAAAAATTTGGTTATGGATGAAAGTGATGAAAAGCCTAAGGTGGGGCTAATGGTTATGCCTGGCTTTTGGATTGGTGGCAGTGTGATTCAGTGTCGAGTCTACCTCTCTGGCATGAGGTTTATTCTATGTAAGGCATGTGAATATATAAAGTTTTGTTTTCTATCAGATTCACTCTAG 861 40.88 MEEATNQTPEAMEALISKIFMNISSLKSAYIQLQAAHTPYEPDKIQAADKLVISELKNLSELKHFYREKNPKPICSVEENGFFPVDLTPDLFISVVEAAFKAIHDFSKPLINMMKAAGWDLDAAANSIEPNVVYAKRAHKKYAFESHICQRMFSGFQHESFSIKSDNLTRNYVMGGGHPRTPFYQAFLKLAKSIWLLHRLAYSFDPNVKVFQVKRGSEFSEVYMESVVKNLVMDESDEKPKVGLMVMPGFWIGGSVIQCRVYLSGMRFILCKACEYIKFCFLSDSL* 287
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi15g00435 286 Pfam Plant protein of unknown function (DUF641) 9 74 IPR006943 -
Vivi15g00435 286 PANTHER PROTEIN GRAVITROPIC IN THE LIGHT 1 5 70 IPR040225 GO:0009639(InterPro)|GO:0009959(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi15g00435 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr10:3113133 Vivi15g00435 Vivi-Chr15:14555852 dispersed
Vivi Vivi-Chr15:14555852 Vivi6g00748 Vivi-Chr6:8654548 dispersed
Vivi Vivi-Chr15:14555852 Vivi19g00094 Vivi-Chr19:1082309 transposed