AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi16g00273 | ATGAATCAAGAATATGACTACTTGTTCAAGCTTTTGCTAATTGGGGATTCTGGAGTTGGCAAATCGTGCCTTCTGCTAAGATTTGCTGATGATTCATATCTAGACAGTTACATAAGCACAATTGGGGTTGATTTTAAAATACGCACTGTGGAGCAAGATGGGAAGACAATTAAACTTCAAATTTGGGACACTGCTGGACAAGAACGCTTCAGGACAATCACTAGCAGCTACTATCGTGGGGCACACGGTATTATCATTGTTTATGATGTAACAGACCAAGAGAGCTTCAATAATGTTAAACAATGGTTGAATGAGATTGACCGTTATGCAAGTGAAAATGTGAACAAGCTTCTGGTTGGAAACAAGTGTGACCTCACTGCTAACAAAGTCGTGTCTTATGAAACAGCCAAGGCATTTGCTGATGAAATTGGAATTCCATTCATGGAGACAAGTGCAAAAAATGCTACCAATGTGGAACAGGCTTTTATGGCCATGGCTGCTGACATCAAGACTAGGATGGCGAGTCAACCAGCGATGAACAATGCAAGGCCACCATCAGTTCAGTTACAAGGACAGCCAGTGAACCAGAAGAGCGGATGCTGCTCTTCTTAG | 612 | 41.99 | MNQEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAADIKTRMASQPAMNNARPPSVQLQGQPVNQKSGCCSS* | 204 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi16g00273 | 203 | PRINTS | Transforming protein P21 ras signature | 9 | 30 | - | - | |
| Vivi16g00273 | 203 | PRINTS | Transforming protein P21 ras signature | 32 | 48 | - | - | |
| Vivi16g00273 | 203 | PRINTS | Transforming protein P21 ras signature | 50 | 72 | - | - | |
| Vivi16g00273 | 203 | PRINTS | Transforming protein P21 ras signature | 112 | 125 | - | - | |
| Vivi16g00273 | 203 | PRINTS | Transforming protein P21 ras signature | 147 | 169 | - | - | |
| Vivi16g00273 | 203 | SMART | arf-sub-2 | 1 | 177 | - | - | |
| Vivi16g00273 | 203 | MobiDBLite | consensus disorder prediction | 174 | 203 | - | - | |
| Vivi16g00273 | 203 | ProSiteProfiles | small GTPase Ras family profile. | 1 | 203 | IPR001806 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Vivi16g00273 | 203 | ProSiteProfiles | small GTPase Rab1 family profile. | 4 | 203 | - | - | |
| Vivi16g00273 | 203 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 3 | 185 | IPR027417 | - | |
| Vivi16g00273 | 203 | ProSiteProfiles | small GTPase Rho family profile. | 2 | 174 | - | - | |
| Vivi16g00273 | 203 | CDD | Rab1-Ypt1 | 7 | 172 | - | - | |
| Vivi16g00273 | 203 | FunFam | Small GTP-binding protein | 2 | 201 | - | - | |
| Vivi16g00273 | 203 | SMART | rho-sub-3 | 11 | 173 | IPR001806 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Vivi16g00273 | 203 | NCBIfam | small GTP-binding protein domain | 7 | 163 | IPR005225 | GO:0005525(InterPro) | |
| Vivi16g00273 | 203 | SMART | ran-sub-2 | 14 | 201 | - | - | |
| Vivi16g00273 | 203 | SMART | ras-sub-4 | 6 | 172 | - | - | |
| Vivi16g00273 | 203 | Gene3D | - | 1 | 198 | IPR027417 | - | |
| Vivi16g00273 | 203 | SMART | rab-sub-5 | 9 | 172 | - | - | |
| Vivi16g00273 | 203 | Pfam | Ras family | 10 | 170 | IPR001806 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Vivi16g00273 | 203 | PANTHER | RAS-RELATED PROTEIN RAB | 7 | 200 | IPR050227 | GO:0016192(PANTHER) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi16g00273 | K07874 | Ras-related protein Rab-1A |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Vivi | Vivi-Chr12:20955424 | Vivi16g00273 | Vivi-Chr16:5694429 | dispersed | |
| Vivi | Vivi-Chr14:26750259 | Vivi16g00273 | Vivi-Chr16:5694429 | dispersed | |
| Vivi | Vivi-Chr15:11695555 | Vivi16g00273 | Vivi-Chr16:5694429 | dispersed | |
| Vivi | Vivi-Chr16:5694429 | Vivi8g01119 | Vivi-Chr8:18736085 | dispersed | |
| Vivi | Vivi-Chr16:5694429 | Vivi13g00258 | Vivi-Chr13:2535388 | transposed |