AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi16g00383 ATGAAGATGCTTTTCTCGTCGCTCATCTCCAGTCAGATTCGGTTCTTGCTTCATGGCTTGAACGATTCCAACTTCGATTCCAACTTCGATTCCGTGGTTCGCGAGCTCTGTCAGTTTATTGAATATGGATATGAGGCAAGCATTTTGTTGCTCCAGACATGCTTGGATCACATGAATTTTCATGGGGGAGACATGAATGATATGCAACTCAAACCTGATGTACTAGCTGCAATCTTTAGATATTTATTGGATAAGCCAAATTTCAGTACCGTGCTTTGTGAAGCATTAAGAAGCTCAGTTATTGGTGAAGGATTTCTTGGAGAGTTCTGTAATGTGTTGCAGTTTTCAGTGTCTGAGAAAATTGGCCTTGGTCTTGCTTTGGCAGACTCAGAGAATGGTGATGTTAGAACAAGTGGGCAAAATTTCTGCATGCGTCAGATTGAGAAATTGTGTGGTAATCCTGCTTCTATTGATTCTCATGAGAAAATTCAGAAAATTATTATGTTCCTATATCAGTCAGAGGGCCTTTCCAAGCATGTAGACTCATTCATGCAAATGCTGTCTTTGATGGAGTTTAAAGAAAGGCCACCATTTGTATTAGCTCCATTACTTTCAGATGATTTACATGAGGACAGTTTTTCAAGGAATTTGGATTTGTTCTATGATTTCAGCGAAAATGAGTTTGATAGTATTCTAGCAGAAATGGAAAATGACACAAGTATGGCTGATATTATGAGGGAACTTGGTTATGGATGCACGCTTAGTACTTCTCATTGTAAAGAGGTCTTATCTCTCTTCTTGCCTCTCTCTGAAGTCACTCTCTCAAGAATACTTAGCACAATTGCCCGCACGCATGCTGGCCTTGAGGATAATCAAAATTCGTATTCAACATTCTGCTCTGCTATTGGTAGCAGCGCCTTATCTGATTCTTCATGCTTGAGCTGTTGGAATGTTGATGTCCTTGTAGATTCCATTAAGCAACTTGCTCCTGGAATCAATTGGACTCTTGTCATGGAAAATCTAGACCATGAAGGCTTCTACTTTCCCAATGAGGGGGCCTTTTCTTTTTTCATGTCCATTTATGCCCGTGCTTGTCAGGATCCCTTTCCACTCCATGCCGTATGTGGGTCTGTCTGGAATAATGTTGACGGCCAGATCTCTTTTCTAAGATATGCTGTAGCAGCCCCACCAGAAACATTTACCTTTGCACATTCTATTAGGAAACTGGCATATACCGATGCATTGCATGGTCAGGAGCTTCCGCATGGGCAGGCAAACCAAGCATGGTTATCTCTTGATCTTTTAGATGTGTTGTGTCAACTAGCTGAGAGAGGCCATGCTGGTTCAGTGCGACTGATGCTTGAGTTTCCTCTTAAACACTGCCCTGAAATTCTACTTCTTGGGATTGCACAAATTAATACTGCCTATAATCTTATCCAGCGTGAGGTATCTTCCACTGTTTTCCCCATGATTATTGGAAATGTCATGGGAAGTGGTGTTATTCTTCACCTTTGGCACTCTAATCCCAAACTTTTAGTGCATGGATTCTTGGATTTTATTAAAAGTGATCAAGGGAACATGGTTACAATTTTGGATCTTTGCCAAGAGCTGAAGATTCTATCATCTGTGTTGGAGCAGATTCCATTCCATTTTAGCATTCGGCTGGCTGCACTAGCTTCTCAGAAAGAATATGCAAGTCTCGATAAATGGTTGAATGATTGTCTAAGAACTCATAAAGATGTTTTCTTTGAGGAGTGTCTCAAGTTTTTGAAGGAGATAACCTTTGATGCAGCAGATGATGTCTCTGCCAATTCATTTCAACATTCTGGTGCTGGAATGAATATAAATGAGGAGACAAGTTCAATCTTTTGGAAGGTCCTCCAAGCTAATACTGATCAGATTGCCTCTAAACAGCTCTCTGAGGAGTTGAAAAGTTTGCATAGAGCATCTATGCATGTTAGTCCTAGGCTACAGAATGTTGGGGCTTCAGATTCATCGACATCTGATGTTTACACGAATGATATAGAGGCTGAGGCAAACTCTTATTTCCACCAAATATTTTCTGGTCAGCTGACCATTGATTCAATGATTCAAATGCTTGCACGTTTCAAGGAATCTTCAGACAGAAGGGAACAATCAATATTTGAGTGCATGATACAAAACCTATTTGAGGAGTACAGGTTCTTCCCTAGGTATCCAGAAAAGCAGCTTAAGATTGCGGCTGGTCTATTTGGTTCTCTGATAAAGCACCAGCTTGTGACTCATCTCACGCTTGGTATTGCTCTTCGTGGAGTGTTGGATGCATTGCGCAAACCAACAGATTCAAAAATATTCACTTTTGGAACAAAGGCTTTGGAGCAGTTTCTGGACCGGCTTATAGAGTGGCCACAATATTGCTATCATATTTTGCAAATATCTCATTTACGTGGTACTCATCCAGAGCTTGTTGCATTTATTGAACGAGCTCTTGCTAGGACTTCGTCTAGTCACTCTGAATCAAATGGGGGCAACAATTCTTCAACTGATCCCCATAGTGGTTCTGCTCCAGCTACTTTGGAAAATGTGGAGGTGCCTGATTCATCATGGCAACTTTTAGGATCTAGGACCACACAGCCTGGACAGCAGACCTCATCTCCACTACCAGCACAACAAAGACATCAAGGGTTTCTTGGTGACAGGCATAAAACATCTGCATCTTTGATTAATTATGGGAGACCAATTCTACCTCCCACTGGTCATGCTTCAAACGTTTCCACAAGTGATGCACTTGGCAGTCAAAAGTCCTTGCAAACAGTGTCGTCACAGACTGCTACTGGTGTTTCTGCAGCCGTGTCTTCCTCAACTGGTTTACTTCATCCTTCCCGAANCATTGCATCAACTAGCATGCTTAGACAACCTTCATATAATACAGGGTTTGGTTCTGCTTTGAACATTGAAACGCTTGTTGCGGCAGCGGAGAGAAGAGATACACATATAGAGGCTCCTACATCTGAAATTCAGGACAAGATATCATTTTTGATTAATAATATTGCGTCTGCAAATATTGAAGCTAAAGCAAAGGAATTCACTGAGGTTTTAGATGAGCAGTACTATCCATGGTTTGCCCGGTACATGGTGATGAAAAGAGCAAGCATTGAGCCCAACTTCCATGACTCATACTTGAAGTTTTTGGACAAAGTTAATTCAAAGACATTGAATAAGGAGATTGTAAAAGCTGCTTATGAGAATTGCAAGGTTCTTTTGAGATCTGAGCTTATAAAATCAAGTTCTGAAGAACGCTCTTTGCTAAAAAATCTGGGAAGTTGGCTTGGAAAGTTTACCATAGGCAGAAATCAAGTACTCAGGGCTCGAGAAATAGATCCCAAGTCTTTGATAATAGAGGCATATGAGAAGGGCCTGATGATTGCTGTGGTCCCATTTACCTCGAAGATTTTGGAACCTTGCCAAAGCAGTCTTGCCTATCGGCCTCCCAATCCTTGGACCATGGCAATTCTTGGTTTACTTGTTGAGATTTATGCATTGCCAAATCTTAAAATGAATCTTAAGTTTGACATTGAGGTCCTGTTTAAGAACCTTGGTGTGGATATGAAGGAAGTAAAGCCGACTTCTCTTCTTAAAGATCGAGTTCGGGAAATAGAAGGAAACCCTGATTTTTCTAATAAAGATGTTGGGGCATCTCAGCCACAAATGGTTTCTGATATTAACCCTGGAATCATGTCCACATTGAGTCAAGTTGAGCTACAGCCTGATATTGTTAATTCATCTCATCCCGGTGGCCACTTAAATGTAATGACTCAGTATCCTTCTGGTCTTCATCTTGCTTCTGGTTCATTAACGGAGGATGATAAAATAGCAACCTTAAGCCTGGGTGATAGGCTTCCTACTGGTCAAGGGCTTTCACAAGTACCTCCAGCGCAGTCACCATATTCTGTTGGTCAGATCCCTGCACCGATCCCTAACATTGGAAGCCATATCATTTTCAACCAAAAACTTGGTGCTTTGGGCTTGCATTATTTCCAGAGAGTTGTACCCATTGCAATGGAGAGGGCTATCAAAGACATAATGGCTCCTATTGTTCAACGTAGTGTTACTATAGCAACTCAGACAACAAAGGAACTTGTTCTAAAGGATTATGCTATGGAGTCTGATGAGTCCCGCATATACAACGCTGCACATTTAATGGTTGCAAGTCTAGCTGGAAGTTTGGCTCATGTCACATGCAAGGAACCCCTTCGCGGCGCCATAACGAATCAGCTTAGGAATTCATTTCAGGGTTTAAACATTGGAACTGAACTTCTAGAACAAGCTGTGCCACTTGTTACTAATGATAATCTTGATTTGGGTTGTGCTGTGATTGAAAATGCTGCAACAGAGAAGATTAAAAAGGCAAAAAGCCACACAGCATACAGGACGTATACAAAGCAGCCAAACCCAAAAGCCACAAAAAGCCCACAATCCTACCTACCCTCAATTGGACGCGAGCCACTCTAG 4491 41.49 MKMLFSSLISSQIRFLLHGLNDSNFDSNFDSVVRELCQFIEYGYEASILLLQTCLDHMNFHGGDMNDMQLKPDVLAAIFRYLLDKPNFSTVLCEALRSSVIGEGFLGEFCNVLQFSVSEKIGLGLALADSENGDVRTSGQNFCMRQIEKLCGNPASIDSHEKIQKIIMFLYQSEGLSKHVDSFMQMLSLMEFKERPPFVLAPLLSDDLHEDSFSRNLDLFYDFSENEFDSILAEMENDTSMADIMRELGYGCTLSTSHCKEVLSLFLPLSEVTLSRILSTIARTHAGLEDNQNSYSTFCSAIGSSALSDSSCLSCWNVDVLVDSIKQLAPGINWTLVMENLDHEGFYFPNEGAFSFFMSIYARACQDPFPLHAVCGSVWNNVDGQISFLRYAVAAPPETFTFAHSIRKLAYTDALHGQELPHGQANQAWLSLDLLDVLCQLAERGHAGSVRLMLEFPLKHCPEILLLGIAQINTAYNLIQREVSSTVFPMIIGNVMGSGVILHLWHSNPKLLVHGFLDFIKSDQGNMVTILDLCQELKILSSVLEQIPFHFSIRLAALASQKEYASLDKWLNDCLRTHKDVFFEECLKFLKEITFDAADDVSANSFQHSGAGMNINEETSSIFWKVLQANTDQIASKQLSEELKSLHRASMHVSPRLQNVGASDSSTSDVYTNDIEAEANSYFHQIFSGQLTIDSMIQMLARFKESSDRREQSIFECMIQNLFEEYRFFPRYPEKQLKIAAGLFGSLIKHQLVTHLTLGIALRGVLDALRKPTDSKIFTFGTKALEQFLDRLIEWPQYCYHILQISHLRGTHPELVAFIERALARTSSSHSESNGGNNSSTDPHSGSAPATLENVEVPDSSWQLLGSRTTQPGQQTSSPLPAQQRHQGFLGDRHKTSASLINYGRPILPPTGHASNVSTSDALGSQKSLQTVSSQTATGVSAAVSSSTGLLHPSRXIASTSMLRQPSYNTGFGSALNIETLVAAAERRDTHIEAPTSEIQDKISFLINNIASANIEAKAKEFTEVLDEQYYPWFARYMVMKRASIEPNFHDSYLKFLDKVNSKTLNKEIVKAAYENCKVLLRSELIKSSSEERSLLKNLGSWLGKFTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVVPFTSKILEPCQSSLAYRPPNPWTMAILGLLVEIYALPNLKMNLKFDIEVLFKNLGVDMKEVKPTSLLKDRVREIEGNPDFSNKDVGASQPQMVSDINPGIMSTLSQVELQPDIVNSSHPGGHLNVMTQYPSGLHLASGSLTEDDKIATLSLGDRLPTGQGLSQVPPAQSPYSVGQIPAPIPNIGSHIIFNQKLGALGLHYFQRVVPIAMERAIKDIMAPIVQRSVTIATQTTKELVLKDYAMESDESRIYNAAHLMVASLAGSLAHVTCKEPLRGAITNQLRNSFQGLNIGTELLEQAVPLVTNDNLDLGCAVIENAATEKIKKAKSHTAYRTYTKQPNPKATKSPQSYLPSIGREPL* 1497
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi16g00383 1496 MobiDBLite consensus disorder prediction 1469 1496 - -
Vivi16g00383 1496 Pfam CCR4-NOT transcription complex subunit 1 HEAT repeat 482 628 IPR032194 -
Vivi16g00383 1496 MobiDBLite consensus disorder prediction 827 922 - -
Vivi16g00383 1496 Pfam CCR4-NOT transcription complex subunit 1 TTP binding domain 652 829 IPR032193 -
Vivi16g00383 1496 Pfam CCR4-NOT transcription complex subunit 1 CAF1-binding domain 992 1211 IPR032191 -
Vivi16g00383 1496 Gene3D - 966 1214 - -
Vivi16g00383 1496 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX 4 1460 IPR040398 GO:0000288(PANTHER)|GO:0000932(PANTHER)|GO:0017148(InterPro)|GO:0030015(PANTHER)|GO:0030015(InterPro)|GO:0060090(PANTHER)
Vivi16g00383 1496 FunFam Transcription regulator 661 829 - -
Vivi16g00383 1496 FunFam Ccr4-Not transcription complex subunit 965 1213 - -
Vivi16g00383 1496 Pfam CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819 1339 1461 IPR024557 -
Vivi16g00383 1496 MobiDBLite consensus disorder prediction 1469 1488 - -
Vivi16g00383 1496 Gene3D - 657 829 IPR038535 -
Vivi16g00383 1496 MobiDBLite consensus disorder prediction 827 884 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi16g00383 K12604 CCR4-NOT transcription complex subunit 1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr15:13514010 Vivi16g00383 Vivi-Chr16:10551996 dispersed