AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi16g00404 ATGGCTCCCAACTCGCTGTCAGTCCGCTTGGAAGAATCCTTTACCCGCAACGCCCTCAGATCCTACTTGGCCGAGTTCATCTCCACTTTCATCTTCGTTTTTGCCGCTGTCGGATCCGCTATGTCTTCCAGGAAACTGATGCCGGATGCCACGTCTGATCCATCTAGTCTGCTTGTGGTTGCACTGGCAAATGCGTTTGCATTGTCGTCGGCAGTGTATATTGCTGCAGGGATCTCGGGAGGACATGTGAATCCGGCTGTCACGTTCGGATTGGCGGTGGGAGGCCACGTCAGCATCCCCACTGCCATGTTGTACTGGATTTCACAGATGCTGGGTGCCACCATGGCTTGCCTGTTCCTGAGAGTCACCACTGTTGGTCAGCACGTTCCGACCCATGCAATAGCGGAGGAAATGACCGGGTTCGGAGCATCCGTATTAGAGGGCGTCCTGACATTCGCACTTGTGTACACGGTCTACGCTGCAGGTGACCCGAGGCGAGGCCCACTGGGATCCATCGGACCCCTTGCCATCGGGCTAATAGAGGGAGCCAATGTGCTGGCGGCCGGGCCATTCACGGGAGGGTCTATGAACCCGGCATCCTCATTCGGGTCAGCCCTAGTTGGAGGCACCTTCAAGAACCAGGCGGTTTACTGGGTGGGACCCTTGATTGGTGGCGCACTGGCTGGGCTGCTGTATGAAAATGTGGTTTTCCCTCCTCAAGACACTGCAATTTCTCAAGATACTGGAATTACAATTGTAAAATTATTTTGGTTATTTAAATTTCTCAAATTTTGTCAAATAAAAGCCAAATCTACAAGATCATCCCACTGTGTACATGAAAGATAA 846 52.36 MAPNSLSVRLEESFTRNALRSYLAEFISTFIFVFAAVGSAMSSRKLMPDATSDPSSLLVVALANAFALSSAVYIAAGISGGHVNPAVTFGLAVGGHVSIPTAMLYWISQMLGATMACLFLRVTTVGQHVPTHAIAEEMTGFGASVLEGVLTFALVYTVYAAGDPRRGPLGSIGPLAIGLIEGANVLAAGPFTGGSMNPASSFGSALVGGTFKNQAVYWVGPLIGGALAGLLYENVVFPPQDTAISQDTGITIVKLFWLFKFLKFCQIKAKSTRSSHCVHER* 282
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi16g00404 281 SUPERFAMILY Aquaporin-like 12 242 IPR023271 -
Vivi16g00404 281 Gene3D Glycerol uptake facilitator protein. 5 246 IPR023271 -
Vivi16g00404 281 PRINTS Major intrinsic protein family signature 20 39 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Vivi16g00404 281 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Vivi16g00404 281 PRINTS Major intrinsic protein family signature 64 88 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Vivi16g00404 281 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Vivi16g00404 281 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Vivi16g00404 281 PRINTS Major intrinsic protein family signature 101 120 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Vivi16g00404 281 CDD MIP 20 235 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Vivi16g00404 281 FunFam Probable aquaporin TIP5-1 4 244 - -
Vivi16g00404 281 ProSitePatterns MIP family signature. 82 90 IPR022357 -
Vivi16g00404 281 PANTHER AQUAPORIN-8 10 238 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Vivi16g00404 281 Pfam Major intrinsic protein 16 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi16g00404 K09873 aquaporin TIP
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr15:13417086 Vivi16g00404 Vivi-Chr16:11247840 dispersed
Vivi Vivi-Chr16:11247840 Vivi4g00303 Vivi-Chr4:2903931 dispersed
Vivi Vivi-Chr16:11247840 Vivi6g00388 Vivi-Chr6:5090705 transposed
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vivi18g01250 . 264 343 Major Intrinsic Protein gene family AT1G31880 51.25 7.76e-20 90.1
Vivi14g01537 . 43 280 Major Intrinsic Protein gene family AT5G37820 48.954 3.89e-76 232.0
Vivi11g00109 . 265 344 Major Intrinsic Protein gene family AT1G31880 66.667 7.87e-33 114.0
Vivi11g00110 . 1 242 Major Intrinsic Protein gene family AT1G31880 45.703 1.19e-62 197.0
Vivi13g00510 . 88 285 Major Intrinsic Protein gene family AT2G37170 88.384 6.89e-128 359.0
Vivi13g00244 . 1 252 Major Intrinsic Protein gene family AT4G01470 82.54 1.12e-148 413.0
Vivi9g00116 . 1 344 Major Intrinsic Protein gene family AT1G31880 48.947 1.12e-105 312.0
Vivi9g00326 . 40 250 Major Intrinsic Protein gene family AT3G16240 62.559 8.78e-82 240.0
Vivi5g00437 . 2 262 Major Intrinsic Protein gene family AT3G06100 53.992 2.29e-93 276.0
Vivi15g00374 . 10 244 Major Intrinsic Protein gene family AT3G16240 50.213 8.94e-72 218.0
Vivi16g00404 . 4 244 Major Intrinsic Protein gene family AT3G47440 64.73 3.99e-110 317.0
Vivi2g00300 . 29 304 Major Intrinsic Protein gene family AT4G10380 83.333 5.88e-169 469.0
Vivi2g00311 . 73 286 Major Intrinsic Protein gene family AT1G01620 87.442 3.09e-138 387.0
Vivi1g00890 . 29 196 Major Intrinsic Protein gene family AT1G31880 31.25 2.95e-15 73.9
Vivi5g00932 . 104 162 Major Intrinsic Protein gene family AT4G00430 83.051 1.28e-28 103.0
Vivi10g00265 . 1 292 Major Intrinsic Protein gene family AT4G18910 69.565 6.57e-144 404.0
Vivi2g00841 . 1 344 Major Intrinsic Protein gene family AT1G31880 68.32 4.19e-165 462.0
Vivi12g00894 . 161 241 Major Intrinsic Protein gene family AT3G61430 76.543 4.17e-31 119.0
Vivi3g00172 . 83 280 Major Intrinsic Protein gene family AT4G35100 91.919 3.39e-134 375.0
Vivi3g00090 . 43 141 Major Intrinsic Protein gene family AT2G45960 34.951 4.15e-10 54.7
Vivi3g00088 . 3 262 Major Intrinsic Protein gene family AT4G35100 31.429 4.11e-24 97.4
Vivi16g00007 . 7 267 Major Intrinsic Protein gene family AT1G17810 74.427 1.15e-125 356.0
Vivi6g00388 . 1 251 Major Intrinsic Protein gene family AT2G36830 77.778 4.49e-140 391.0
Vivi6g00267 . 88 283 Major Intrinsic Protein gene family AT2G37170 87.755 3.75e-127 357.0
Vivi8g00570 . 88 285 Major Intrinsic Protein gene family AT2G37170 71.717 1.64e-95 276.0
Vivi8g00441 . 1 237 Major Intrinsic Protein gene family AT3G56950 63.291 2.03e-109 313.0
Vivi15g00852 . 98 287 Major Intrinsic Protein gene family AT4G00430 90.0 2.35e-124 350.0
Vivi15g00851 . 98 287 Major Intrinsic Protein gene family AT4G00430 85.263 7.58e-117 331.0
Vivi5g00716 . 282 343 Major Intrinsic Protein gene family AT1G31880 41.935 1.30e-10 62.4
Vivi14g00772 . 1 275 Major Intrinsic Protein gene family AT5G37810 66.426 1.61e-128 372.0
Vivi13g00014 . 74 286 Major Intrinsic Protein gene family AT4G00430 89.671 1.07e-140 393.0
Vivi8g01371 . 90 227 Major Intrinsic Protein gene family AT3G04090 64.493 1.17e-54 170.0
Vivi8g01122 . 1 251 Major Intrinsic Protein gene family AT2G36830 70.518 3.56e-121 342.0
Vivi9g00772 . 2 294 Major Intrinsic Protein gene family AT1G80760 73.244 5.74e-147 415.0
Vivi11g00790 . 86 277 Major Intrinsic Protein gene family AT4G18910 46.354 7.59e-55 174.0
Vivi4g00707 . 288 343 Major Intrinsic Protein gene family AT1G31880 51.786 5.49e-12 66.6
Vivi4g00303 . 1 245 Major Intrinsic Protein gene family AT2G25810 68.273 8.04e-112 320.0
Vivi6g01018 . 29 203 Major Intrinsic Protein gene family AT1G31880 35.326 6.06e-19 87.8