AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi16g00416 ATGATGATAGACTTGAGCGCATTCTCGGAGGAGAAATTCGATGCGAAGAAATGGATCAACACGGCGTGCCAAAATCGTCACCCGCAGGAGACTCTGGAGAAGCAGTTGGTGGATCTGGAGATGAAACTTCAGATGATGTCGGAGGAGATCGCCGCCTCCCTCGAGGAGCAGAGCGCTGCCGCCCTCCTCCGCGTCCCCCGCGCCACCCGCGATGTCATCCGCCTCCGCGACGACGCCGTTTCGCTTCGCCACTCCGTCTCCTCCATTCTCCTCAAGCTCAAGAAGGCAGAGGGATCCTCAGCAGAATCTATAGCTGCCCTTGCTAAAGTTGATATTGTCAAGCAGAGAATGGAAGCTGCCTATGAGACATTACAGGATGCTGCTGGGCTAACTCAATTAAGCTCTACTGTGGAGGATGTCTTTGCTAGTGGTGATCTTCCTAAGGCTGCAGAAACCTTGGCCAACATGAGGCACTGCTTGTCTGCTGTTGGGGAGGTTGCTGAATTTGCTAACATTAGGAAACAACTTGAAGTTTTGGAGGATAGGCTTGATTCAATGGTTCAGCCTCGTCTCACGGACGCTTTATCTAATCGCAAGGTTGAGGTTGCTCAAGATTTGCGGGGAATTCTCATTCGGATTGGAAGGTTTAAGTCTCTAGAAGCACATTATACAAAAGTTCACCTAAAGCCCATAAGGCAACTTTGGGAAGATTTTGACTCCAAACAGCGAACTAATAAACTTGCAAATGAGAAGAATGAAGTAGAAAGGCTATTGAGTAGCAATGACTTCCAATCTATTTTGCCCACAATTTCATTCTCCAGTTGGTTGCCAAGTTTCTATGATGAATTGCTGCTCTATCTTGAACAAGAATGGAAATGGTGTATGATCGCTTTTCTGGATGATTATAAAACTCTTGTCCCAAAGCTACTAATTGAGACAATGGCAACTATTGGTTCAAATTTTGTCTCTCGGATCAATCTTGCAACTGGGGATGTTGTTGCTGAAACCAAGGCATTGGCTAAAGGCATACTAGATATCTTGTCTGGGGATATGCAAAAAGGTATCAAAATCCAGAGCAAGCATCTTGAGGCACTGATTGAGTTACACAATATGACGGGAACATTTGCGAGGAATGTACAGCATCTATTTTCAGAATCCAATCTTCCAGTGTTATTGGATACACTGAAGGCAGTGTACCTTCCTTATGAATCATTTAAGCAGAGGTATGGACAGATGGAACGTGTCATACTTTCTTCTGAAATTGCTGGTGTAGATCTAAGAGGAGCCGTTGTGCGTGGTGTGGGAGCCCAGGGTATTGAACTCAGTGAAACAGTTAGAAGGATGGAGGAGTCTATTCCCCAAGTCATTCTGTTCCTTGATGAGGCTGTCGAGAGGTGCATCAGTTTTACTGGTGGTTCTGAGATAGATGAACTAATTCTAGCACTAGATGACATAATGTTACAGTACATCTCTACCCTGCAAGAGACCCTCAAATCATTAAGAGCTGTATGTGGAGTAGATACTGGTGATGGTGGTGGTACAAAGAAGGAAATGGTATCGGACAGAAAAGAAGGAACTCATAATGCACGCAAAGTAGACTTGATGTCAAATGAGGAAGAGTGGTCTATTGTCCAAGGTGCATTGCAGATCCTCACAGTTGCAGATTGTTTAACAAGCAGATCCGCAGTCTTTGAAGCTTCCTTGAAGGCCACTCTTGCTAGACTGAGCACAAGTTTGTCCCTTTCAGTGTTTGGTTCAAATTTGGACCAAAATCAGTCACATGTAGCCAGTGATGATGGGAATGGGGAATCGTCTATGATTGGAAGGGCTGCCTTGGATGTGGCATCTGTGCGGCTGGTTGATGTTCCGGAGAAGGCTCGGAGACTCTTTAACCTTTTAGATCAGTCTAAAGACCCACGGTTTCATGCACTTCCACTTGCATCTCAGAGGGTTGCAGCATTTGCAGACACAGTGAATGAACTTGTTTATGATGTCCTCATATCCAAAGTAAGGCAGCGCCTCAGTGATGTATCCCGTTTGCCCATCTGGTCTGCTGTAGAGGAACCAAGCGCTTTTCCTCTTCCGAGTTTCAATGCATACCCTCAGGCCTATGTGACCAGTGTTGGTGAATATCTTCTTACTTTGCCTCAACAGTTGGAGCCACTTGCTGAGGGCATTTCTAGCAGTGACCCCAATGCTGATGAAGCTCAGTTCTTTGCAACTGAATGGATGTTCAAGGTTGCTGAGGGTGCTACTGCTCTTTACATGGAGCAATTGCGAGGCATTCAATACATAACAGATCGTGGAGCACAGCAGCTATCAGCTGACATCGAGTATTTGAGTAATGTGCTTTCTGCTTTATCAATGCCGATCCCTCCAATCCTGGCCACATTCCACTCATGCCTTTCAACTCCAAGAGATCAGCTGAAGGATTTTGTAAAATCAGATGCAGGAAATCAGCTTGATCTTCCAACTGCCAACCTTGTATGTAAGATCCGGCGTGTAGGTTTAGAATAG 2517 45.61 MMIDLSAFSEEKFDAKKWINTACQNRHPQETLEKQLVDLEMKLQMMSEEIAASLEEQSAAALLRVPRATRDVIRLRDDAVSLRHSVSSILLKLKKAEGSSAESIAALAKVDIVKQRMEAAYETLQDAAGLTQLSSTVEDVFASGDLPKAAETLANMRHCLSAVGEVAEFANIRKQLEVLEDRLDSMVQPRLTDALSNRKVEVAQDLRGILIRIGRFKSLEAHYTKVHLKPIRQLWEDFDSKQRTNKLANEKNEVERLLSSNDFQSILPTISFSSWLPSFYDELLLYLEQEWKWCMIAFLDDYKTLVPKLLIETMATIGSNFVSRINLATGDVVAETKALAKGILDILSGDMQKGIKIQSKHLEALIELHNMTGTFARNVQHLFSESNLPVLLDTLKAVYLPYESFKQRYGQMERVILSSEIAGVDLRGAVVRGVGAQGIELSETVRRMEESIPQVILFLDEAVERCISFTGGSEIDELILALDDIMLQYISTLQETLKSLRAVCGVDTGDGGGTKKEMVSDRKEGTHNARKVDLMSNEEEWSIVQGALQILTVADCLTSRSAVFEASLKATLARLSTSLSLSVFGSNLDQNQSHVASDDGNGESSMIGRAALDVASVRLVDVPEKARRLFNLLDQSKDPRFHALPLASQRVAAFADTVNELVYDVLISKVRQRLSDVSRLPIWSAVEEPSAFPLPSFNAYPQAYVTSVGEYLLTLPQQLEPLAEGISSSDPNADEAQFFATEWMFKVAEGATALYMEQLRGIQYITDRGAQQLSADIEYLSNVLSALSMPIPPILATFHSCLSTPRDQLKDFVKSDAGNQLDLPTANLVCKIRRVGLE* 839
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi16g00416 838 Pfam Golgi complex component 7 (COG7) 4 834 IPR019335 GO:0006886(InterPro)|GO:0017119(InterPro)
Vivi16g00416 838 PANTHER CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 7 2 837 IPR019335 GO:0006886(InterPro)|GO:0006890(PANTHER)|GO:0007030(PANTHER)|GO:0017119(PANTHER)|GO:0017119(InterPro)
Vivi16g00416 838 Coils Coil 29 56 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi16g00416 K20294 conserved oligomeric Golgi complex subunit 7
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr16:11544451 Vivi4g00629 Vivi-Chr4:7749088 dispersed