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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi16g00417 ATGGCTTCATCCCTTGCTCTCAGGTCACTTCTCTCCAAGTCTCTTCGCCCCAATTTCCGTGCTCTAGCCACAGCTCCCTCGGTCTCTCGATCCTTCAACACCAACGCCATCCGCGATTACGATGATGATGAGCGTCGTCTCGATGTTGATCGCCTCTCTGATCGCTCCTTCTCTCGAAGAGGCGATTTTGCTCCTAGCTCCTTCTCAGATGTGTTCGATCCTTTTTCACCGACTCGGAGTCTGAGCCAGGTCCTGAACCTGATGGACCATTTCATGGACAATCCATTCCTCTCGACATCTCGAGGTATGGGAACTGGAATTCGGCGATCATGGGACGTGAAAGAAACCGACGACGCTTTGCATCTGAGAGTGGACATGCCTGGACTGAGTAAAGAGGACGTGAAGGTAAGCGTGGAGCAGAACACTCTGACCATCCAAGGCGAAGAAAAGAACGAAACGGAGGACGAAGAGAGCCGGAGGAGATACAGCAGCAGAATTGATTTGCCGGAGAAGCTGTACAAGACTGGTGAGATAAAGGCTGAGATGAACAAAGGTGTGCTGAAGATTGTGGTGCCAAAGCTGAAGGAAGAGGAGAGGACTGACGTCATCAATGTCAAGGTTGAGTAG 627 51.2 MASSLALRSLLSKSLRPNFRALATAPSVSRSFNTNAIRDYDDDERRLDVDRLSDRSFSRRGDFAPSSFSDVFDPFSPTRSLSQVLNLMDHFMDNPFLSTSRGMGTGIRRSWDVKETDDALHLRVDMPGLSKEDVKVSVEQNTLTIQGEEKNETEDEESRRRYSSRIDLPEKLYKTGEIKAEMNKGVLKIVVPKLKEEERTDVINVKVE* 209
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi16g00417 208 SUPERFAMILY HSP20-like chaperones 77 199 IPR008978 -
Vivi16g00417 208 Gene3D - 66 207 IPR008978 -
Vivi16g00417 208 PANTHER 23.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 1 199 IPR044656 -
Vivi16g00417 208 CDD ACD-sHsps-like 112 193 - -
Vivi16g00417 208 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 98 208 IPR002068 -
Vivi16g00417 208 Pfam Hsp20-alpha crystallin family 112 207 IPR002068 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi16g00417 K13993 HSP20 family protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr16:11604752 Vivi2g00532 Vivi-Chr2:5248528 dispersed