AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi16g00427 | ATGGATCTGAAGTCCAATCATTCTTCTCCTGTTCTTACTGATCCTCCACCTGTAAACAAGTCAAGATTTGGCATCCGTTCCAATTTGTTGCCATACTCTCCCCCAGGAGCAGCATTCTCTTCTACCCTGTTCCTAACCATTCCAAGGAAGAAGAATGGAGTACTGGATGATGTACGTTCCAGCAGTTGGCTGGATGCCATGAAATCCTCTTCTCCTACTCATAAGAAGATAACCAAGGATTTCAACACTGTGCTTGCATCAACTGACACTGATGTTACTTACCGCACCTGGCTGCTTAAGTATCCATCAGCACTTAAATCTTTTGAGCAAATCACGAACTATGCCAAGGGAAAAAGAATAGCATTGTTTCTGGACTATGATGGGACTCTCTCACCTATTGTAGACAACCCTGACCGAGCCTTCATGTCTGATTGTATGCGTGCTACTGTGAGAAACGTGGCTAAGTTTTTCCCAACCGCAATAATTAGTGGAAGAAGTCGGGATAAGGTGTATAATTTTGTGGGACTAACAGAGCTCTACTACGCTGGTAGTCATGGGATGGACATCATGGGCCCTGTCAGACACTCCATTTCTAATGACCATCCAAATTGTATTAGGTTAACTGACAAGCAGGGTAAGGAAGTTAATTTGTTCCAGCCTGCGAGTGAATTTTTACCCATGATCGATGAGGTTTTTAGATCCCTTGTCAGGTGTACTAAAGAAATCAAAGGAGCAGAAGTAGAAAATAATAAGTTCTGTGTCTCTGTACATTACCGCAATGTGGATGAGAAGTATTGGAAGACAATAGCACAGTGTGTAGATGATATTCTGAAAGACTACCCTCGTCTGCGATTAACTCATGGCCGGAAGGTTTTAGAGGTCCGACCTGTGATTGACTGGGATAAGGGAAAAGCTGTTGAGTTTTTACTTGAGTCACTTGGGCTGAATAATTCTGATGATGTACTGCCAATTTATGTTGGAGATGACCGGACAGACGAAGATGCCTTCAAGTTTTTGAGAGATGGAAAACGTGGTTATGGCATTTTAGTGTCTTCTGTGCCCAAGGAAAGCAATGCATTTTACTCACTCAGGGACCCATTAGAGGTCATGGAATTTCTCAAGTTACTGGTGATGTGGAAGAAGTCAAGTGCACTATAA | 1158 | 42.75 | MDLKSNHSSPVLTDPPPVNKSRFGIRSNLLPYSPPGAAFSSTLFLTIPRKKNGVLDDVRSSSWLDAMKSSSPTHKKITKDFNTVLASTDTDVTYRTWLLKYPSALKSFEQITNYAKGKRIALFLDYDGTLSPIVDNPDRAFMSDCMRATVRNVAKFFPTAIISGRSRDKVYNFVGLTELYYAGSHGMDIMGPVRHSISNDHPNCIRLTDKQGKEVNLFQPASEFLPMIDEVFRSLVRCTKEIKGAEVENNKFCVSVHYRNVDEKYWKTIAQCVDDILKDYPRLRLTHGRKVLEVRPVIDWDKGKAVEFLLESLGLNNSDDVLPIYVGDDRTDEDAFKFLRDGKRGYGILVSSVPKESNAFYSLRDPLEVMEFLKLLVMWKKSSAL* | 386 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi16g00427 | 385 | NCBIfam | trehalose-phosphatase | 117 | 377 | IPR003337 | GO:0005992(InterPro) | |
| Vivi16g00427 | 385 | Gene3D | - | 120 | 209 | IPR023214 | - | |
| Vivi16g00427 | 385 | Gene3D | - | 226 | 384 | IPR023214 | - | |
| Vivi16g00427 | 385 | FunFam | Trehalose 6-phosphate phosphatase | 221 | 297 | - | - | |
| Vivi16g00427 | 385 | CDD | HAD-TPP | 121 | 371 | - | - | |
| Vivi16g00427 | 385 | NCBIfam | HAD-IIB family hydrolase | 122 | 341 | IPR006379 | - | |
| Vivi16g00427 | 385 | FunFam | Trehalose 6-phosphate phosphatase | 227 | 385 | - | - | |
| Vivi16g00427 | 385 | FunFam | Trehalose 6-phosphate phosphatase | 120 | 208 | - | - | |
| Vivi16g00427 | 385 | Pfam | Trehalose-phosphatase | 123 | 366 | IPR003337 | GO:0005992(InterPro) | |
| Vivi16g00427 | 385 | SUPERFAMILY | HAD-like | 121 | 379 | IPR036412 | - | |
| Vivi16g00427 | 385 | PANTHER | TREHALOSE 6-PHOSPHATE PHOSPHATASE | 46 | 383 | IPR044651 | GO:0004805(PANTHER)|GO:0004805(InterPro)|GO:0005992(PANTHER)|GO:0005992(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi16g00427 | K01087 | trehalose 6-phosphate phosphatase [EC:3.1.3.12] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Vivi | Vivi-Chr16:12003325 | Vivi2g00499 | Vivi-Chr2:4898034 | dispersed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Vivi2g00499 | . | 573 | 834 | Trehalose Biosynthesis gene family | AT1G70290 | 27.778 | 6.06e-15 | 75.1 | |
| Vivi17g00717 | . | 5 | 861 | Trehalose Biosynthesis gene family | AT1G60140 | 57.993 | 0.0 | 962.0 | |
| Vivi18g00389 | . | 577 | 835 | Trehalose Biosynthesis gene family | AT1G06410 | 26.087 | 6.53e-11 | 62.0 | |
| Vivi1g00516 | . | 1 | 795 | Trehalose Biosynthesis gene family | AT4G17770 | 65.125 | 0.0 | 1044.0 | |
| Vivi2g00697 | . | 1 | 249 | Trehalose Biosynthesis gene family | AT4G17770 | 72.908 | 1.02e-126 | 376.0 | |
| Vivi2g00696 | . | 607 | 855 | Trehalose Biosynthesis gene family | AT4G17770 | 71.486 | 8.88e-126 | 375.0 | |
| Vivi19g00027 | . | 1 | 823 | Trehalose Biosynthesis gene family | AT1G78580 | 84.364 | 0.0 | 1422.0 | |
| Vivi16g00427 | . | 581 | 834 | Trehalose Biosynthesis gene family | AT1G70290 | 26.619 | 1.30e-12 | 67.4 | |
| Vivi2g00201 | . | 62 | 618 | Trehalose Biosynthesis gene family | AT4G24040 | 58.571 | 0.0 | 644.0 | |
| Vivi1g00745 | . | 1 | 467 | Trehalose Biosynthesis gene family | AT1G23870 | 64.668 | 0.0 | 610.0 | |
| Vivi12g00130 | . | 168 | 846 | Trehalose Biosynthesis gene family | AT1G06410 | 80.176 | 0.0 | 1163.0 | |
| Vivi10g00251 | . | 173 | 840 | Trehalose Biosynthesis gene family | AT1G06410 | 77.463 | 0.0 | 1122.0 | |
| Vivi10g00298 | . | 1 | 363 | Trehalose Biosynthesis gene family | AT1G78580 | 80.0 | 0.0 | 586.0 | |
| Vivi10g00299 | . | 414 | 823 | Trehalose Biosynthesis gene family | AT1G78580 | 84.634 | 0.0 | 734.0 | |
| Vivi15g00734 | . | 590 | 846 | Trehalose Biosynthesis gene family | AT1G23870 | 27.018 | 2.26e-09 | 56.2 | |
| Vivi16g00876 | . | 582 | 835 | Trehalose Biosynthesis gene family | AT1G06410 | 26.882 | 5.89e-10 | 58.9 | |
| Vivi3g00510 | . | 1 | 651 | Trehalose Biosynthesis gene family | AT1G06410 | 64.472 | 0.0 | 827.0 |