AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi16g00429 ATGGAGTTTCTTGGGCACTCAACGTGGGTTCTTGTGCACATTGCGCTCTTCTCTGGCCTCTGTTTCGCTGCAGACCCATTTGTGAATTTCGAGCTGACCTACTCTTTTATCACTGCTTCTCCTTTGGGTGTTCCCCAGCAGGTTATAGCAGTTAATGGAAATTTTCCAGGTCATCCTTTGAATGTTACAACAAATAACAATGTTGTTGTTAATGTGACAAACAAATTGAATGAAGACCTCTTGATCACTTGGCCAGGGGTACAAATGCGCCGTAATTCTTGGCAAGATGGTGTTCTAGGCACAAATTGCCCTATACCATCTAACAGGAAGTGGGATTACCAGTTTCAGGTTAAGGATCAGATTGGCAGTTTCTTCTACTTCCCATCTCTCAATTTTCAGAGAGCAGCTGGTGGCTTTGGGTCATTTATTATTACTAACAGACCAGTTATCTCACTGCCTTTCGCAGCCCCAGATGGGGATATCATACTCCTCATTGGTGACTGGTACACACAAAACCATACGGCTCTGCGGCAGACCCTTAATGCTGGAAAAGACCTTGGGATGCCAGATGGAGTTCTCATCAATGGGAAGGGACCTTACAGATACAACACTACTCTTGTACCAGATGGAATAGCATATGAAACAGTTTCAGTTGAGCCAGGAAAAACTTATCGAGTTCGGGTTCACAATGTTGGAATCTCCACTAGTCTGAACTTCAGAATTCAGAACCATAATATGCTTCTAGTGGAAACAGAGGGACATTACACATCACAACAAAACTATAGTAACTTAGATATTCATGTTGGGCAGTCTTACACCTTTTTAGTTACCATGGATCAAAATGCAAGTACCGATTACTACATTGTGGCCAGTGCCAGGTTTGTGAATGAGTCACTTTGGCAAAGAGTTACTGGTGTCGCTGTGTTGCAGTACTCCAATTCTAAAGGAGCTGCAACTGGTCCTCTCCCTCCTGGGCCAGATGACTTGTATGACAAGACATTTTCAATGAACCAAGCAAGATCTATCAGGCAAAATGTATCTGCAAGTGGAGCTCGTCCTAACCCACAGGGGTCTTTTCACTATGGTTCAATCAATGTGACTGATACATATGTGTTAAGGAGCATGCCACTAGTGACAATTAACAACACACTTAGGGCTACATTTAATGGGATCTCATTTGTCAATCCCGAGACACCAATCAGGCTGGCTGACCAGCATAAAGTTAAGGGAGCTTACAAGCTTGATTACCCGAAAAAGCCTCTTACAGGAGCACCAAAACTTGATATATCTGTTATCAATGGTACATATAAGGGGTTTATAGAAGTTATATTGCAGAACAATGATACAATAATGCAGAGCTTCCACATGGATGGTTATTCATTTTTTGTGGTCGGGATGGATTATGGTAACTGGACAGAAAGCAGTAGGGGCACATACAATAAGTGGGATGCGATTGCTCGCTGCACAGCACAGGTTTTCCCTGGGGCATGGACAGCAGTGTTAATCTCTCTTGACAATGCTGGAGCATGGAATCTTAGAGTAGAAAACCTTGACAGATGGTATCTGGGCCAAGAAACATACATGAGAATCGTCAATCCTGAGGAAAATGGTGAAACAGAGTTTTCTGCTCCCAGTAATATTTTGTATTGTGGCGCTCTTAAGAATTTGCAAGGAAGCCAGAATTCAAGTAATGCTCCAATGTTGATCACCGGGTGGAAACTGAAGCTGTTTTTCACACTACTGCTGACACTATCTGCTGCCATTTCCATATCCTGCTAA 1779 42.95 MEFLGHSTWVLVHIALFSGLCFAADPFVNFELTYSFITASPLGVPQQVIAVNGNFPGHPLNVTTNNNVVVNVTNKLNEDLLITWPGVQMRRNSWQDGVLGTNCPIPSNRKWDYQFQVKDQIGSFFYFPSLNFQRAAGGFGSFIITNRPVISLPFAAPDGDIILLIGDWYTQNHTALRQTLNAGKDLGMPDGVLINGKGPYRYNTTLVPDGIAYETVSVEPGKTYRVRVHNVGISTSLNFRIQNHNMLLVETEGHYTSQQNYSNLDIHVGQSYTFLVTMDQNASTDYYIVASARFVNESLWQRVTGVAVLQYSNSKGAATGPLPPGPDDLYDKTFSMNQARSIRQNVSASGARPNPQGSFHYGSINVTDTYVLRSMPLVTINNTLRATFNGISFVNPETPIRLADQHKVKGAYKLDYPKKPLTGAPKLDISVINGTYKGFIEVILQNNDTIMQSFHMDGYSFFVVGMDYGNWTESSRGTYNKWDAIARCTAQVFPGAWTAVLISLDNAGAWNLRVENLDRWYLGQETYMRIVNPEENGETEFSAPSNILYCGALKNLQGSQNSSNAPMLITGWKLKLFFTLLLTLSAAISISC* 593
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi16g00429 592 Gene3D - 24 146 IPR008972 -
Vivi16g00429 592 Pfam Multicopper oxidase 399 534 IPR011706 GO:0005507(InterPro)|GO:0016491(InterPro)
Vivi16g00429 592 SUPERFAMILY Cupredoxins 379 550 IPR008972 -
Vivi16g00429 592 SUPERFAMILY Cupredoxins 21 174 IPR008972 -
Vivi16g00429 592 FunFam Monocopper oxidase-like protein 363 561 - -
Vivi16g00429 592 Pfam Multicopper oxidase 38 147 IPR011707 GO:0005507(InterPro)
Vivi16g00429 592 PANTHER MULTI-COPPER OXIDASE 29 535 IPR045087 GO:0016491(PANTHER)|GO:0046658(PANTHER)
Vivi16g00429 592 Pfam Multicopper oxidase 160 314 IPR001117 -
Vivi16g00429 592 Gene3D - 158 351 IPR008972 -
Vivi16g00429 592 SUPERFAMILY Cupredoxins 154 353 IPR008972 -
Vivi16g00429 592 Gene3D - 363 562 IPR008972 -
Vivi16g00429 592 FunFam Monocopper oxidase-like protein 158 351 - -
Vivi16g00429 592 FunFam Monocopper oxidase-like protein SKU5 22 146 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi16g00429 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr16:12077244 Vivi2g00496 Vivi-Chr2:4870557 dispersed
Vivi Vivi-Chr16:12077244 Vivi12g00386 Vivi-Chr12:5574793 transposed