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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi16g00438 ATGGAAGGCTCATTTTTTTCTAGCCATTTCCTTCCAGCTCTTCTCATTTTTCTTTCCCTTACTTCCTACATAAACTTAAGCTCAGCAGCCAGGCCTGCTGCTGATAAAGCCAGCACCGAGTTCATCCGAACATCTTGTGGTACAACCACTTATCCCAGACTTTGCTACACCTCCCTCTCAGCTCATGCCAGTGTAATCCAAACCAGCCCAAAGCTTCTAGCAGACACAGCCCTTGCTGTGACCCTTTCAACCGCACGATCTACATCATCCCTGATGTCAAAGATGGTGCAAAGTCATGGCCTAAAGCCTAGAGAAGTTGCAGCCATGCACGACTGTGTGGAAGAGTTGAGCGACTCAGTAGATCAGCTTCGAAGAGCAATGGGGGAGATGACCCAAATAAAAGGCTCCAATTTTGGGCTCATGATGGATGACATACAAACATGGGTTAGTACTGCCTTGACGGATGAGGACACGTGCACTGATGGGTTCGCCGGAAACGCCATGAATGGGAATCTAAAGACCACCGTGAGGGCTCGCATAGTTAACATGGCGCATATGACTAGCAACGCCTTGGGTTTGATCAATAGTTATGCTTCCCTTCACAATTAG 609 47.95 MEGSFFSSHFLPALLIFLSLTSYINLSSAARPAADKASTEFIRTSCGTTTYPRLCYTSLSAHASVIQTSPKLLADTALAVTLSTARSTSSLMSKMVQSHGLKPREVAAMHDCVEELSDSVDQLRRAMGEMTQIKGSNFGLMMDDIQTWVSTALTDEDTCTDGFAGNAMNGNLKTTVRARIVNMAHMTSNALGLINSYASLHN* 203
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi16g00438 202 Pfam Plant invertase-pectin methylesterase inhibitor 41 192 IPR006501 GO:0004857(InterPro)
Vivi16g00438 202 Gene3D Invertase-pectin methylesterase inhibitor family protein 36 197 IPR035513 -
Vivi16g00438 202 NCBIfam pectinesterase inhibitor domain 15 197 IPR006501 GO:0004857(InterPro)
Vivi16g00438 202 PANTHER PECTINESTERASE INHIBITOR-LIKE 14 193 IPR051955 GO:0004857(PANTHER)|GO:0043086(PANTHER)
Vivi16g00438 202 SUPERFAMILY Plant invertase-pectin methylesterase inhibitor 40 196 IPR035513 -
Vivi16g00438 202 CDD PMEI-like-3 44 199 - -
Vivi16g00438 202 SMART PMEI-2 37 193 IPR006501 GO:0004857(InterPro)
Vivi16g00438 202 Coils Coil 113 133 - -
Vivi16g00438 202 FunFam Pectin methylesterase inhibitor 1 37 197 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi16g00438 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr16:12323616 Vivi16g00440 Vivi-Chr16:12359339 dispersed
Vivi Vivi-Chr16:12323616 Vivi16g00439 Vivi-Chr16:12343319 tandem
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vivi7g01340 . 8 344 Carbohydrate Esterase gene family AT3G63010 29.558 8.61e-45 155.0
Vivi5g00886 . 40 336 Carbohydrate Esterase gene family AT2G19150 47.826 8.38e-95 283.0
Vivi1g01362 . 80 337 Carbohydrate Esterase gene family AT2G19150 33.846 6.29e-44 149.0
Vivi2g00539 . 11 362 Carbohydrate Esterase gene family AT5G47500 73.864 0.0 542.0
Vivi14g01234 . 1 460 Carbohydrate Esterase gene family AT3G27320 64.871 0.0 573.0
Vivi18g00141 . 485 621 Carbohydrate Esterase gene family AT5G36210 30.07 1.19e-06 50.1
Vivi18g00788 . 1 319 Carbohydrate Esterase gene family AT3G48700 40.557 2.07e-70 229.0
Vivi18g00819 . 69 729 Carbohydrate Esterase gene family AT5G36210 75.338 0.0 1060.0
Vivi18g00820 . 62 729 Carbohydrate Esterase gene family AT5G36210 72.917 0.0 1034.0
Vivi18g00961 . 60 359 Carbohydrate Esterase gene family AT5G47500 40.333 1.64e-83 258.0
Vivi1g01122 . 135 301 Carbohydrate Esterase gene family AT5G14310 69.412 6.18e-79 239.0
Vivi1g01123 . 367 446 Carbohydrate Esterase gene family AT5G14310 65.0 9.56e-28 100.0
Vivi16g00559 . 27 341 Carbohydrate Esterase gene family AT5G16080 34.925 3.15e-57 187.0
Vivi7g00184 . 1 343 Carbohydrate Esterase gene family AT3G63010 63.848 2.17e-156 438.0
Vivi14g01579 . 59 362 Carbohydrate Esterase gene family AT5G47500 37.143 4.38e-68 215.0
Vivi1g00497 . 26 324 Carbohydrate Esterase gene family AT1G24793 61.204 1.23e-136 388.0
Vivi1g00465 . 304 448 Carbohydrate Esterase gene family AT1G23200 75.862 7.03e-78 239.0
Vivi1g00283 . 207 341 Carbohydrate Esterase gene family AT5G16080 54.286 1.53e-43 148.0
Vivi1g00224 . 17 476 Carbohydrate Esterase gene family AT1G26120 67.308 0.0 617.0
Vivi10g00023 . 1 557 Carbohydrate Esterase gene family AT1G11580 51.521 0.0 553.0
Vivi16g00250 . 4 361 Carbohydrate Esterase gene family AT1G69940 55.402 3.46e-148 421.0
Vivi16g00251 . 1 361 Carbohydrate Esterase gene family AT1G69940 56.164 1.49e-148 422.0
Vivi16g00252 . 14 361 Carbohydrate Esterase gene family AT1G69940 54.93 2.82e-140 402.0
Vivi16g00253 . 9 361 Carbohydrate Esterase gene family AT1G69940 54.062 8.92e-141 404.0
Vivi16g00362 . 54 319 Carbohydrate Esterase gene family AT5G61570 55.97 6.56e-94 309.0
Vivi19g00637 . 80 380 Carbohydrate Esterase gene family AT5G55590 65.116 1.55e-135 389.0
Vivi19g00803 . 27 136 Carbohydrate Esterase gene family AT3G16970 40.0 8.76e-24 89.4
Vivi19g00804 . 27 138 Carbohydrate Esterase gene family AT3G16970 40.179 2.41e-22 85.5
Vivi19g00805 . 23 140 Carbohydrate Esterase gene family AT3G16970 41.525 1.72e-25 94.0
Vivi19g00809 . 22 135 Carbohydrate Esterase gene family AT3G16970 42.105 1.58e-26 95.9
Vivi11g00011 . 212 592 Carbohydrate Esterase gene family AT3G14310 75.591 0.0 583.0
Vivi11g00012 . 120 547 Carbohydrate Esterase gene family AT2G26440 63.318 0.0 545.0
Vivi11g00026 . 40 583 Carbohydrate Esterase gene family AT1G53830 42.652 3.27e-140 416.0
Vivi11g00029 . 1 359 Carbohydrate Esterase gene family AT1G69940 51.762 3.12e-134 387.0
Vivi11g00259 . 61 357 Carbohydrate Esterase gene family AT5G47500 51.342 1.81e-107 315.0
Vivi3g01070 . 71 389 Carbohydrate Esterase gene family AT1G05310 72.414 0.0 518.0
Vivi9g00018 . 229 581 Carbohydrate Esterase gene family AT1G53840 62.921 5.83e-164 481.0
Vivi5g00259 . 26 565 Carbohydrate Esterase gene family AT3G05610 42.959 1.03e-164 483.0
Vivi5g00286 . 52 415 Carbohydrate Esterase gene family AT3G05910 73.151 0.0 575.0
Vivi5g00463 . 1 326 Carbohydrate Esterase gene family AT3G48700 33.333 4.79e-56 185.0
Vivi5g00595 . 493 695 Carbohydrate Esterase gene family AT5G36210 24.424 3.83e-17 84.3
Vivi16g00542 . 27 302 Carbohydrate Esterase gene family AT5G16080 36.949 3.26e-53 175.0
Vivi16g00444 . 56 216 Carbohydrate Esterase gene family AT1G53830 31.288 2.85e-20 86.3
Vivi16g00441 . 62 198 Carbohydrate Esterase gene family AT1G53830 30.657 1.16e-19 84.0
Vivi16g00440 . 62 218 Carbohydrate Esterase gene family AT1G53830 29.936 2.00e-22 92.4
Vivi16g00439 . 62 218 Carbohydrate Esterase gene family AT1G53830 30.573 4.94e-23 94.4
Vivi16g00438 . 62 218 Carbohydrate Esterase gene family AT1G53830 30.573 4.94e-23 94.4
Vivi16g00432 . 281 536 Carbohydrate Esterase gene family AT5G51490 74.609 6.11e-143 409.0
Vivi16g00431 . 254 511 Carbohydrate Esterase gene family AT2G45220 74.231 2.14e-141 405.0
Vivi4g01079 . 25 357 Carbohydrate Esterase gene family AT5G47500 45.787 2.64e-104 309.0
Vivi8g00125 . 420 444 Carbohydrate Esterase gene family AT5G14310 84.0 1.22e-10 54.7
Vivi8g00163 . 14 321 Carbohydrate Esterase gene family AT5G16080 34.177 1.42e-54 180.0
Vivi8g00177 . 28 337 Carbohydrate Esterase gene family AT5G16080 33.962 8.78e-55 180.0
Vivi8g00178 . 196 341 Carbohydrate Esterase gene family AT3G63010 33.553 3.44e-19 80.9
Vivi12g01236 . 34 525 Carbohydrate Esterase gene family AT3G43270 64.634 0.0 680.0
Vivi3g00375 . 16 359 Carbohydrate Esterase gene family AT5G47500 37.5 9.10e-83 254.0
Vivi8g00491 . 23 329 Carbohydrate Esterase gene family AT1G68620 37.117 1.07e-60 196.0
Vivi8g00478 . 28 319 Carbohydrate Esterase gene family AT5G16080 31.561 4.95e-33 122.0
Vivi4g01279 . 238 546 Carbohydrate Esterase gene family AT5G09760 73.139 1.75e-173 494.0
Vivi13g00852 . 3 560 Carbohydrate Esterase gene family AT5G04960 56.915 0.0 642.0
Vivi13g00851 . 2 572 Carbohydrate Esterase gene family AT4G02330 47.547 0.0 535.0
Vivi15g00514 . 165 256 Carbohydrate Esterase gene family AT1G68620 41.304 3.28e-18 81.3
Vivi15g00512 . 179 340 Carbohydrate Esterase gene family AT5G16080 31.953 5.34e-17 77.4
Vivi15g00511 . 211 323 Carbohydrate Esterase gene family AT5G16080 35.294 1.35e-11 61.2
Vivi15g00439 . 254 511 Carbohydrate Esterase gene family AT2G45220 79.537 3.40e-153 435.0
Vivi15g00438 . 15 519 Carbohydrate Esterase gene family AT3G60730 55.929 0.0 585.0
Vivi7g00325 . 7 578 Carbohydrate Esterase gene family AT1G02810 59.162 0.0 654.0
Vivi7g00326 . 33 493 Carbohydrate Esterase gene family AT4G02320 48.922 2.57e-148 434.0
Vivi7g00434 . 61 357 Carbohydrate Esterase gene family AT5G47500 48.148 1.08e-96 291.0
Vivi7g00482 . 52 416 Carbohydrate Esterase gene family AT2G46930 71.507 0.0 580.0
Vivi7g00483 . 3 416 Carbohydrate Esterase gene family AT2G46930 65.301 0.0 576.0
Vivi7g00512 . 256 611 Carbohydrate Esterase gene family AT2G26450 52.514 7.72e-127 377.0
Vivi7g00513 . 349 601 Carbohydrate Esterase gene family AT4G33230 54.902 1.57e-100 303.0
Vivi16g00704 . 27 403 Carbohydrate Esterase gene family AT5G23870 72.414 0.0 583.0
Vivi5g00840 . 40 118 Carbohydrate Esterase gene family AT3G16970 31.25 1.07e-06 43.5
Vivi14g00705 . 27 427 Carbohydrate Esterase gene family AT5G15860 73.544 0.0 620.0
Vivi14g00898 . 19 341 Carbohydrate Esterase gene family AT5G16080 50.0 2.96e-109 320.0
Vivi14g00161 . 29 543 Carbohydrate Esterase gene family AT3G05620 64.423 0.0 697.0
Vivi14g00160 . 5 596 Carbohydrate Esterase gene family AT3G05610 48.693 0.0 654.0
Vivi14g00093 . 33 339 Carbohydrate Esterase gene family AT2G19150 45.13 3.26e-86 268.0
Vivi14g00032 . 211 441 Carbohydrate Esterase gene family AT2G26450 42.489 2.39e-57 190.0
Vivi14g00031 . 424 532 Carbohydrate Esterase gene family AT4G02300 52.294 3.92e-39 135.0
Vivi14g00017 . 52 415 Carbohydrate Esterase gene family AT3G05910 77.534 0.0 624.0
Vivi5g01093 . 129 529 Carbohydrate Esterase gene family AT3G59010 63.158 3.79e-172 491.0
Vivi3g00438 . 123 328 Carbohydrate Esterase gene family AT3G48700 43.689 3.57e-44 150.0
Vivi3g00439 . 18 196 Carbohydrate Esterase gene family AT1G49660 52.514 1.36e-64 202.0
Vivi3g00440 . 3 328 Carbohydrate Esterase gene family AT3G48700 42.025 1.51e-84 255.0
Vivi3g00441 . 57 338 Carbohydrate Esterase gene family AT3G48700 39.362 1.58e-56 194.0
Vivi3g00443 . 13 137 Carbohydrate Esterase gene family AT1G49640 51.2 8.31e-38 134.0
Vivi3g00444 . 46 316 Carbohydrate Esterase gene family AT1G19190 35.793 3.89e-48 163.0
Vivi8g01485 . 1 284 Carbohydrate Esterase gene family AT2G41530 82.042 0.0 498.0
Vivi8g01094 . 67 388 Carbohydrate Esterase gene family AT1G05310 54.489 5.69e-121 370.0
Vivi8g00725 . 1 427 Carbohydrate Esterase gene family AT3G09410 63.466 0.0 576.0
Vivi9g00815 . 230 269 Carbohydrate Esterase gene family AT5G36210 65.0 6.82e-14 62.0
Vivi5g00060 . 61 357 Carbohydrate Esterase gene family AT5G47500 38.538 5.32e-69 218.0
Vivi5g00153 . 6 567 Carbohydrate Esterase gene family AT3G05610 53.381 0.0 628.0
Vivi4g00398 . 281 446 Carbohydrate Esterase gene family AT3G27320 67.47 5.46e-74 228.0
Vivi4g00472 . 31 336 Carbohydrate Esterase gene family AT5G16080 36.624 2.73e-59 206.0
Vivi4g00474 . 28 342 Carbohydrate Esterase gene family AT5G16080 34.891 3.67e-66 209.0
Vivi4g00475 . 28 342 Carbohydrate Esterase gene family AT5G16080 38.39 7.12e-70 219.0
Vivi13g00937 . 28 342 Carbohydrate Esterase gene family AT5G16080 29.787 9.22e-37 132.0
Vivi2g00937 . 6 397 Carbohydrate Esterase gene family AT4G19420 66.837 0.0 591.0
Vivi18g01719 . 191 341 Carbohydrate Esterase gene family AT3G05120 46.753 8.99e-41 142.0
Vivi18g01718 . 192 342 Carbohydrate Esterase gene family AT3G63010 44.156 3.21e-43 147.0
Vivi6g00966 . 254 398 Carbohydrate Esterase gene family AT2G45220 81.379 1.48e-83 252.0
Vivi6g00964 . 254 511 Carbohydrate Esterase gene family AT2G45220 76.062 3.06e-147 420.0
Vivi6g00963 . 75 511 Carbohydrate Esterase gene family AT2G45220 68.989 0.0 643.0
Vivi6g00962 . 2 408 Carbohydrate Esterase gene family AT2G45220 66.425 0.0 570.0
Vivi6g00847 . 24 319 Carbohydrate Esterase gene family AT1G68620 35.37 1.12e-52 175.0
Vivi16g01046 . 262 597 Carbohydrate Esterase gene family AT3G49220 80.655 0.0 597.0
Vivi16g01044 . 451 709 Carbohydrate Esterase gene family AT5G36210 23.214 5.21e-11 64.3