AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi19g00897 | ATGGGTGTCTTCTCTAAACCAGCAATTGAACAGTTGCCTCTCATCAGAAACTGCATGCCCTTCTCTGGAATTCCTCTCATAGACCTCTCACAACCTGACTCCAAAGCCCTCCTCATTGAAGCCTGCCAAGAGTTTGGCTTCTTCAAGGTCATCAACCATGGTGTCCCGATGGACCTCATCTCCAAGTTGGAAGCTGAAGCTATCAACTTCTTCTCACTTCCTCTCTCTGAGAAGGAAAAAGCAGGGCCTCCTAATCCTTCTGGATACGGAAACAAGAGAATTGGATCAAGCGGCGATATTGGTCGGGTTGAGTACCTTCTGCTCAATCCGCAGAGCTTCCCCTCTGTTTTTGGCCAAAACCCAGATATGTTTCGTTCAGCAGTGAGTGATTATCTATCAGCTGTGAGGAAGATGGCTTGTGAGATTCTTGAATTGTTGGCTGACGGGCTGATGATTCAACCAAGGAATGTGTTCAGTAAGCTTTTAATGGATGAACAGAGTGACTCTGTTTTCAGGCTAAATCATTATCCACCATATCCAGAACGCCAAGCTTTGAGTGGAAAGTGTATGATTGGATTTGGAGAGCACACCGACCCTCAGATCATATCTGTTTTAAGATCTAACAACACATCTGGACTGCAAATCTCTTTGAGAAATGGGAATTGGATTTCAGTTCCACCAGATGAAAACTCCTTCTTCATCAACGTTGGTGACTCCTTGCAGGTGATGACAAACGGTCGGTTTCAGAGTGTGAAGCATAGGGTGTTGACAAATAGCTGTAAATCTAGAGTTTCGATGATATACTTTGGAGGACCACCATTGAGTGAGAAAATAGCACCATTGCCCTCACTCATGGAAGGAGAGGAGAGCCATTACAAAGAGTTTACATGGTTCGAGTATAAAAGATCTGCATACAACACAAGATTGGCTGATAATAGGCTTGTGTTCTTCCAGAAAGTGGCAGCCACATGA | 972 | 44.44 | MGVFSKPAIEQLPLIRNCMPFSGIPLIDLSQPDSKALLIEACQEFGFFKVINHGVPMDLISKLEAEAINFFSLPLSEKEKAGPPNPSGYGNKRIGSSGDIGRVEYLLLNPQSFPSVFGQNPDMFRSAVSDYLSAVRKMACEILELLADGLMIQPRNVFSKLLMDEQSDSVFRLNHYPPYPERQALSGKCMIGFGEHTDPQIISVLRSNNTSGLQISLRNGNWISVPPDENSFFINVGDSLQVMTNGRFQSVKHRVLTNSCKSRVSMIYFGGPPLSEKIAPLPSLMEGEESHYKEFTWFEYKRSAYNTRLADNRLVFFQKVAAT* | 324 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi19g00897 | 323 | Pfam | 2OG-Fe(II) oxygenase superfamily | 168 | 270 | IPR044861 | - | |
| Vivi19g00897 | 323 | SUPERFAMILY | Clavaminate synthase-like | 11 | 311 | - | - | |
| Vivi19g00897 | 323 | PANTHER | 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED | 23 | 302 | IPR050231 | GO:0009416(PANTHER)|GO:0016706(PANTHER)|GO:0045487(PANTHER)|GO:0052634(PANTHER) | |
| Vivi19g00897 | 323 | ProSiteProfiles | Fe(2+) 2-oxoglutarate dioxygenase domain profile. | 166 | 272 | IPR005123 | - | |
| Vivi19g00897 | 323 | FunFam | Gibberellin 2-beta-dioxygenase 1 | 6 | 310 | - | - | |
| Vivi19g00897 | 323 | Pfam | non-haem dioxygenase in morphine synthesis N-terminal | 24 | 91 | IPR026992 | - | |
| Vivi19g00897 | 323 | Gene3D | - | 5 | 311 | IPR027443 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi19g00897 | K04125 | gibberellin 2beta-dioxygenase [EC:1.14.11.13] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Vivi | Vivi-Chr10:5846741 | Vivi19g00897 | Vivi-Chr19:15497729 | dispersed | |
| Vivi | Vivi-Chr19:15497729 | Vivi7g00433 | Vivi-Chr7:4377203 | dispersed | |
| Vivi | Vivi-Chr19:15497729 | Vivi19g00898 | Vivi-Chr19:15603207 | tandem |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Vivi19g00897 | . | 58 | 357 | GA20OX gene family | AT5G51810 | 31.715 | 4.04e-41 | 145.0 | |
| Vivi19g00898 | . | 63 | 373 | GA20OX gene family | AT5G51810 | 28.882 | 1.08e-40 | 144.0 | |
| Vivi19g00449 | . | 94 | 286 | GA20OX gene family | AT4G25420 | 25.641 | 3.10e-17 | 77.4 | |
| Vivi19g00450 | . | 50 | 341 | GA20OX gene family | AT5G51810 | 34.228 | 7.52e-48 | 163.0 | |
| Vivi2g00001 | . | 44 | 357 | GA20OX gene family | AT4G25420 | 38.154 | 5.31e-69 | 219.0 | |
| Vivi18g00197 | . | 32 | 377 | GA20OX gene family | AT5G51810 | 48.718 | 6.19e-116 | 341.0 | |
| Vivi18g00306 | . | 36 | 368 | GA20OX gene family | AT4G25420 | 30.117 | 1.35e-44 | 162.0 | |
| Vivi18g01112 | . | 147 | 339 | GA20OX gene family | AT1G60980 | 34.872 | 2.86e-32 | 119.0 | |
| Vivi1g01070 | . | 58 | 328 | GA20OX gene family | AT4G25420 | 35.662 | 1.29e-46 | 162.0 | |
| Vivi10g00013 | . | 56 | 364 | GA20OX gene family | AT5G51810 | 32.803 | 5.55e-45 | 158.0 | |
| Vivi11g00557 | . | 53 | 338 | GA20OX gene family | AT1G60980 | 32.292 | 9.05e-45 | 157.0 | |
| Vivi11g00558 | . | 58 | 325 | GA20OX gene family | AT5G07200 | 33.091 | 4.21e-40 | 141.0 | |
| Vivi11g00559 | . | 38 | 335 | GA20OX gene family | AT5G07200 | 31.803 | 3.22e-38 | 139.0 | |
| Vivi11g00560 | . | 91 | 335 | GA20OX gene family | AT5G07200 | 32.794 | 3.06e-37 | 134.0 | |
| Vivi2g00596 | . | 35 | 353 | GA20OX gene family | AT4G25420 | 31.532 | 3.10e-48 | 165.0 | |
| Vivi2g00594 | . | 59 | 154 | GA20OX gene family | AT4G25420 | 32.292 | 2.53e-12 | 62.0 | |
| Vivi2g00592 | . | 59 | 334 | GA20OX gene family | AT4G25420 | 32.616 | 4.62e-41 | 152.0 | |
| Vivi2g00591 | . | 38 | 353 | GA20OX gene family | AT4G25420 | 31.193 | 4.44e-47 | 162.0 | |
| Vivi2g00590 | . | 59 | 265 | GA20OX gene family | AT4G25420 | 28.986 | 2.32e-22 | 93.2 | |
| Vivi2g00588 | . | 86 | 357 | GA20OX gene family | AT4G25420 | 30.935 | 2.11e-39 | 140.0 | |
| Vivi2g00586 | . | 59 | 355 | GA20OX gene family | AT4G25420 | 29.866 | 1.95e-35 | 129.0 | |
| Vivi2g00585 | . | 61 | 335 | GA20OX gene family | AT4G25420 | 33.696 | 2.95e-44 | 154.0 | |
| Vivi16g00285 | . | 92 | 320 | GA20OX gene family | AT1G60980 | 29.614 | 2.02e-24 | 97.8 | |
| Vivi16g00286 | . | 35 | 351 | GA20OX gene family | AT1G60980 | 31.153 | 6.25e-39 | 140.0 | |
| Vivi11g00198 | . | 55 | 342 | GA20OX gene family | AT1G60980 | 30.034 | 6.01e-35 | 128.0 | |
| Vivi11g00278 | . | 82 | 364 | GA20OX gene family | AT4G25420 | 29.043 | 4.26e-26 | 105.0 | |
| Vivi13g00327 | . | 28 | 341 | GA20OX gene family | AT1G60980 | 32.915 | 6.77e-50 | 170.0 | |
| Vivi9g00424 | . | 25 | 357 | GA20OX gene family | AT5G51810 | 32.258 | 1.15e-49 | 169.0 | |
| Vivi9g00425 | . | 61 | 360 | GA20OX gene family | AT5G51810 | 28.296 | 6.48e-28 | 109.0 | |
| Vivi9g00426 | . | 77 | 335 | GA20OX gene family | AT5G07200 | 24.615 | 2.14e-20 | 88.6 | |
| Vivi9g00427 | . | 34 | 367 | GA20OX gene family | AT4G25420 | 32.456 | 1.43e-47 | 163.0 | |
| Vivi9g00428 | . | 81 | 317 | GA20OX gene family | AT5G51810 | 26.337 | 3.18e-09 | 55.1 | |
| Vivi9g00429 | . | 81 | 335 | GA20OX gene family | AT5G07200 | 27.586 | 8.17e-19 | 86.3 | |
| Vivi9g00430 | . | 165 | 335 | GA20OX gene family | AT5G07200 | 29.48 | 1.82e-14 | 71.6 | |
| Vivi9g00431 | . | 57 | 333 | GA20OX gene family | AT5G07200 | 25.714 | 4.19e-17 | 79.3 | |
| Vivi9g00631 | . | 57 | 348 | GA20OX gene family | AT1G60980 | 29.47 | 2.27e-39 | 141.0 | |
| Vivi5g00306 | . | 35 | 343 | GA20OX gene family | AT4G25420 | 33.754 | 8.73e-55 | 182.0 | |
| Vivi15g00273 | . | 61 | 330 | GA20OX gene family | AT4G25420 | 37.091 | 6.04e-53 | 176.0 | |
| Vivi15g00272 | . | 40 | 330 | GA20OX gene family | AT4G25420 | 33.22 | 1.29e-49 | 169.0 | |
| Vivi16g00543 | . | 1 | 375 | GA20OX gene family | AT4G25420 | 48.404 | 5.92e-115 | 334.0 | |
| Vivi4g01111 | . | 147 | 339 | GA20OX gene family | AT1G60980 | 29.231 | 4.65e-19 | 82.8 | |
| Vivi2g00273 | . | 39 | 356 | GA20OX gene family | AT4G25420 | 33.23 | 2.74e-59 | 194.0 | |
| Vivi2g00274 | . | 39 | 336 | GA20OX gene family | AT4G25420 | 34.768 | 5.32e-58 | 189.0 | |
| Vivi2g00316 | . | 55 | 359 | GA20OX gene family | AT5G07200 | 32.581 | 1.61e-36 | 133.0 | |
| Vivi2g00429 | . | 37 | 211 | GA20OX gene family | AT5G07200 | 27.895 | 9.40e-15 | 70.9 | |
| Vivi10g00320 | . | 74 | 296 | GA20OX gene family | AT1G60980 | 32.143 | 7.47e-32 | 117.0 | |
| Vivi10g00323 | . | 72 | 151 | GA20OX gene family | AT5G51810 | 36.25 | 3.76e-09 | 51.6 | |
| Vivi10g00328 | . | 84 | 138 | GA20OX gene family | AT5G51810 | 36.364 | 5.73e-08 | 45.8 | |
| Vivi10g00331 | . | 190 | 290 | GA20OX gene family | AT1G60980 | 42.157 | 2.37e-23 | 94.4 | |
| Vivi10g00333 | . | 37 | 150 | GA20OX gene family | AT5G07200 | 31.092 | 1.74e-11 | 60.1 | |
| Vivi10g00417 | . | 62 | 367 | GA20OX gene family | AT5G51810 | 29.022 | 2.47e-39 | 141.0 | |
| Vivi7g01023 | . | 57 | 330 | GA20OX gene family | AT1G60980 | 30.392 | 3.18e-29 | 113.0 | |
| Vivi4g01330 | . | 27 | 372 | GA20OX gene family | AT4G25420 | 53.026 | 1.19e-135 | 390.0 | |
| Vivi4g01319 | . | 22 | 371 | GA20OX gene family | AT5G51810 | 42.416 | 2.28e-109 | 323.0 | |
| Vivi15g00864 | . | 51 | 357 | GA20OX gene family | AT5G07200 | 30.547 | 5.25e-36 | 132.0 | |
| Vivi13g00849 | . | 40 | 349 | GA20OX gene family | AT5G51810 | 35.987 | 3.16e-62 | 201.0 | |
| Vivi15g00602 | . | 40 | 352 | GA20OX gene family | AT4G25420 | 36.478 | 2.65e-60 | 196.0 | |
| Vivi15g00509 | . | 1 | 376 | GA20OX gene family | AT5G51810 | 49.868 | 1.31e-114 | 333.0 | |
| Vivi7g00433 | . | 61 | 375 | GA20OX gene family | AT5G51810 | 29.909 | 3.94e-37 | 135.0 | |
| Vivi16g00711 | . | 57 | 363 | GA20OX gene family | AT1G44090 | 31.546 | 3.56e-38 | 137.0 | |
| Vivi3g00476 | . | 44 | 358 | GA20OX gene family | AT4G25420 | 35.78 | 1.42e-54 | 181.0 | |
| Vivi3g00477 | . | 181 | 344 | GA20OX gene family | AT5G07200 | 43.976 | 1.10e-40 | 142.0 | |
| Vivi3g00479 | . | 139 | 368 | GA20OX gene family | AT5G07200 | 37.603 | 2.21e-41 | 144.0 | |
| Vivi3g00481 | . | 46 | 365 | GA20OX gene family | AT5G51810 | 34.731 | 1.61e-53 | 178.0 | |
| Vivi3g00485 | . | 181 | 338 | GA20OX gene family | AT5G07200 | 41.25 | 1.45e-35 | 128.0 | |
| Vivi3g00486 | . | 44 | 367 | GA20OX gene family | AT4G25420 | 33.923 | 1.31e-51 | 173.0 | |
| Vivi3g00487 | . | 46 | 279 | GA20OX gene family | AT5G51810 | 36.585 | 3.82e-37 | 132.0 | |
| Vivi3g00489 | . | 46 | 350 | GA20OX gene family | AT5G51810 | 35.647 | 1.05e-51 | 174.0 | |
| Vivi3g00492 | . | 44 | 367 | GA20OX gene family | AT4G25420 | 33.731 | 5.40e-53 | 177.0 | |
| Vivi3g00494 | . | 51 | 334 | GA20OX gene family | AT4G25420 | 34.471 | 1.86e-50 | 169.0 | |
| Vivi3g00495 | . | 44 | 352 | GA20OX gene family | AT4G25420 | 35.535 | 1.42e-59 | 194.0 | |
| Vivi13g00061 | . | 89 | 312 | GA20OX gene family | AT4G25420 | 24.554 | 3.08e-11 | 62.4 | |
| Vivi13g00056 | . | 38 | 351 | GA20OX gene family | AT4G25420 | 36.89 | 6.25e-60 | 196.0 | |
| Vivi5g00030 | . | 56 | 356 | GA20OX gene family | AT5G07200 | 32.71 | 2.90e-43 | 151.0 | |
| Vivi4g00429 | . | 110 | 355 | GA20OX gene family | AT5G07200 | 28.745 | 1.06e-22 | 94.0 | |
| Vivi4g00431 | . | 39 | 367 | GA20OX gene family | AT4G25420 | 30.725 | 3.95e-48 | 165.0 | |
| Vivi16g00957 | . | 40 | 364 | GA20OX gene family | AT4G25420 | 34.036 | 1.01e-61 | 199.0 |