AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g00905 ATGCACCTTCCCATATCTAACAATGCTAAGGATTTCTATGCAAGAGTTGGGAAATCTTGGAAGCAGGGTTACCTCCTTTATGGCCTTCCTGGGATGGGAAAATCTACCATGATTGCTGCCATGGAGAATATGTTGTTGTACGACATCTATGATCTTGAACTAATGGTGGTCGGTGACAACACCGAGCGGCCGAGGAGGAAGAGAAAGACCCCATTAAAGATAAAGCGAAGGTAG 234 45.3 MHLPISNNAKDFYARVGKSWKQGYLLYGLPGMGKSTMIAAMENMLLYDIYDLELMVVGDNTERPRRKRKTPLKIKRR* 78
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g00905 77 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 52 IPR027417 -
Vivi19g00905 77 Gene3D - 2 70 IPR027417 -
Vivi19g00905 77 PANTHER BCS1 AAA-TYPE ATPASE 8 62 IPR050747 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g00905 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr19:16043352 Vivi9g01044 Vivi-Chr9:21779346 dispersed
Vivi Vivi-Chr4:18902110 Vivi19g00905 Vivi-Chr19:16043352 dispersed
Vivi Vivi-Chr19:16043352 Vivi3g00354 Vivi-Chr3:3303133 transposed