AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g00906 ATGGGGTTCGAGGAGTGGCCGAAGTGGGACTGCATGATAATTCTTCCCTTGCCAATGATGAAGAGTCACCTGAGATCTACAAGGCCACCTGACTTTCTATCCGTTTGGACCCATGCGAGATATGAGCAGCTGCAATTGCGTTTGCAGCAAGAGAAATCCATGCGCACTATGCTTGAGAGGGCGATGGGTCGAGCTTCTAGTACATTGTCACCTGGGCATAGGCATTTTGCTGCTGAGACGAAGGAGTTGATTGCTGAGATTGAATTACTTGAAGAAGAGGTTGCAAATCGTGAACAACATGTTCTCACTCTCTATAGGAGCATTTTTGAACAATGCATTAGTCGACCACCTTCTGAGCAAAGCTCAAGCATGGCTTCTCCTGCCCATACAAAAAATGAATCAAGGAAACACCCAAGTATAATTTCAAGTGCATTTTGCTCCTCAAAGAAGTTCCCTTTGGGACCTTTCCAAGTTCTGACTTCTATGAATGACACGGAAAAAAAAAACCTCAATAAGAATGAAACAATTACAGCACTAGAGACCTGTTGGCTTCCCTGGAGAAAGAAGAAACCTAGCTGTCCAAGAAGACCTTATGTGCATGAAAAGTTACCAACCATGGACAGAAGTATGCTGCGGACTCTGAAAGATCATCTCTACCAGTGCCCGAGCAAATTGTCCGAGGAAATGGTCAGGTGTATGGCTGCAGTATATTGCTGGCTTCGTGGTGCGGCATCTGTGAATCCAGAGAAAAATCGATCACTGTTATTGTCAAGGTCATCCACTAATGTTATACTCCCTCGTCGTGGTATTGAAGAAGACCGGGAATGGTCTTGTAAATCCATGGTAGAAATATCTTGGATATCAACAGACAAAAGTCAATTCTCTCGTGCATCGTACGCCATCAACAACTATAGAGTTCTCATCGAACAACTGGAAAAGGTGAATGTCAGCCAGATGGAAAGCAATGCCCAAACTGCATTTTGGGTTAATGTGTACAATTCTCTAGTTATGCATGCATATCTAGCATATGGAATTCCCCACAGTTCGCTTAGAAGGTTGGCCTTGTTTCACAAGCCATGGAGCAACAAGCACTGCTACAGGCAGCAGAGACTGATAATCCGTGGCTGCTTACAACATTGGAGGGTAAATCGTAAGTCCAAATGCCATAGAGCAGTCAATATTTTGCTTCCGTACACCCCGAATTGGCCGGTGTCTTGA 1218 44.5 MGFEEWPKWDCMIILPLPMMKSHLRSTRPPDFLSVWTHARYEQLQLRLQQEKSMRTMLERAMGRASSTLSPGHRHFAAETKELIAEIELLEEEVANREQHVLTLYRSIFEQCISRPPSEQSSSMASPAHTKNESRKHPSIISSAFCSSKKFPLGPFQVLTSMNDTEKKNLNKNETITALETCWLPWRKKKPSCPRRPYVHEKLPTMDRSMLRTLKDHLYQCPSKLSEEMVRCMAAVYCWLRGAASVNPEKNRSLLLSRSSTNVILPRRGIEEDREWSCKSMVEISWISTDKSQFSRASYAINNYRVLIEQLEKVNVSQMESNAQTAFWVNVYNSLVMHAYLAYGIPHSSLRRLALFHKPWSNKHCYRQQRLIIRGCLQHWRVNRKSKCHRAVNILLPYTPNWPVS* 406
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g00906 405 Coils Coil 73 100 - -
Vivi19g00906 405 PANTHER UNCHARACTERIZED 38 359 - -
Vivi19g00906 405 Pfam Leucine-zipper of ternary complex factor MIP1 42 111 IPR025757 -
Vivi19g00906 405 Coils Coil 41 61 - -
Vivi19g00906 405 MobiDBLite consensus disorder prediction 116 137 - -
Vivi19g00906 405 Pfam Protein of unknown function, DUF547 317 360 IPR006869 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g00906 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr19:16083440 Vivi3g00543 Vivi-Chr3:5269488 dispersed