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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g00911 ATGCCAAGCCCACCGTCCCCTTCGGTTCTTGAAGCCATCACCCAGGCTGTCCTAGCAAACCAGGCTGATCTGGGAATTATCTTTGATACAGATGTTGACAGATTTGCTACTGTGGATTCCACTGGTCATGAGTTAAATAGGAATCGTCTGATTGCTTTAATGTCCGCCATTGTTCTTGAGGAACAGCCAGGAACAACCACAGCCACAGATAGTGTAACTTCAGATGGCCTAACTACATACATTGAAAAGGAACTTGAAGGAAAGCACCACCGGTTCGAAAGGAGCTATAAAAATGGATGGTTCCTTCTAAGACTCTCCCTTCATGACCCTGTTCTTCCCCTTAACATTGAGGCACCAAGCCATGATGATGCTGTGAAACTTGGACTTGCTGTTCTTGCTGCTGCTAAAGAGTTTCCTGCTCTGGATTCATCTACCTTAGACAAGTTTGTCCAATCATCATTGCATGTCCACCTTTGCATGGCCACCTTTGGGCCATGTGTCATCTTCTATTTCCTCATCCCCTGA 525 45.9 MPSPPSPSVLEAITQAVLANQADLGIIFDTDVDRFATVDSTGHELNRNRLIALMSAIVLEEQPGTTTATDSVTSDGLTTYIEKELEGKHHRFERSYKNGWFLLRLSLHDPVLPLNIEAPSHDDAVKLGLAVLAAAKEFPALDSSTLDKFVQSSLHVHLCMATFGPCVIFYFLIP* 175
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g00911 174 Pfam Phosphoglucomutase-phosphomannomutase, alpha-beta-alpha domain II 2 42 IPR005845 GO:0005975(InterPro)
Vivi19g00911 174 Gene3D - 1 37 - -
Vivi19g00911 174 SUPERFAMILY Phosphoglucomutase, C-terminal domain 94 134 IPR036900 GO:0016868(InterPro)
Vivi19g00911 174 PANTHER PHOSPHOHEXOSE MUTASE 98 151 IPR050060 GO:0004615(PANTHER)|GO:0009570(PANTHER)
Vivi19g00911 174 SUPERFAMILY Phosphoglucomutase, first 3 domains 2 43 IPR016055 GO:0005975(InterPro)|GO:0016868(InterPro)
Vivi19g00911 174 Gene3D - 39 104 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g00911 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr19:16323933 Vivi1g00450 Vivi-Chr1:4852705 dispersed