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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g00918 ATGAGAAATGAGATGTGTGAAGGCCTCAAAAGCATTCCGAGGCCTATAAAAGTGAAACAAATGATTTTGTGCGGGAGTCCTCATCCTGTTTTCGATAGAAAAACATCCATCGTGAGTAAGCACATTAGTGAATTGGATGATTGCGAGAAGCTATTTATTCCAATGCATGACGAATGCCCTGGTCATTGGTATCTGTGCGTCATTGACTTCAAAAACTCTTATACCCAAATTTTGGACTCATTACGATCGAAGAATTGA 258 39.53 MRNEMCEGLKSIPRPIKVKQMILCGSPHPVFDRKTSIVSKHISELDDCEKLFIPMHDECPGHWYLCVIDFKNSYTQILDSLRSKN* 86
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g00918 85 Pfam Ulp1 protease family, C-terminal catalytic domain 44 83 IPR003653 GO:0006508(InterPro)|GO:0008234(InterPro)
Vivi19g00918 85 Gene3D Adenoviral Proteinase; Chain A 16 85 - -
Vivi19g00918 85 SUPERFAMILY Cysteine proteinases 41 85 IPR038765 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g00918 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr19:16533381 Vivi3g00880 Vivi-Chr3:11335675 dispersed
Vivi Vivi-Chr19:16533381 Vivi13g00958 Vivi-Chr13:19294756 transposed