AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g00947 ATGCCGAGGACAAGGGGATCAGAAATGCCTCAAAGGCAGTCTCCCCGAGGATCACTTCAGCTTCGAACATCAAGCTCTGATTCTGATCCTCTACATCATCGTCCTATTACCGATCGGAGCCCCAAGGTAGGAGACCGTCGATCCCCAAGAGGTGCTCAATCTGATTCCGTAAATCAGAAGAAACTCGGTACCCGCATTGCAGATTTAGAATCTCAACTTGGGCAAGCTCTAGAAGAGCTAAAGAACCTGAAATTTCAGTTAGCTTCTGCTGAAGCAGCAAAGAAAGAAGCTCAAGAAGAATTGGAGAAGAAAGCTAACATGCCAATCACTCATGATGCTATGGAAATCCAAGAGAAACATTCTCCAACAGAAGCTTACAAATCAAACAAAATAGACAGCAGTCATCCTGATGAAGCTCCAGATGACAACCAGCAGGAAACTGATGTCTTTGAAGTTCCAGTGGAAAAAGTGGCAGTTGAGGCCAAGCCACCAGCAATTCTGGAACCAGAGAAAGTGTCATTTGAAGAGTTGGCTATGAAGAATGATGAGATTAATTTACTGAAAGCAAAGTTAGAGGAAAAGGAAAAGGAATTAGAGGGGTCTTGTCAAGAAATTGAGGGCCTGAAAAAGCAGTTAAATGAAGCAGCGTCAGAGATTGTGTTGGTCCGAACAAAGGAGGAAGAGATGGCTCTGAGGCTGAGCCAACTGGGAGAAGACCTGAAAGCAAATAAAGCTAATGAAGCTCAATTGAAGGAGAAATTGGAAGCTGTGGAAGGAGTGAAGGAGGCATTGGAAGCAGAGATGAAAAAACTGAGAGTGCAAACTGAGCAATGGAGGAAAGCAGCAGATGCTGCAGCAGCTGTTTTGGCTGGGGGAGTGGAGATGAATGGCAGAAGGATTTCAGAGAGGTGTGGGTCAATGGATAAACACTTTGGCGGGGTATTTGAGTCATCTGCAGGTGGGTATGCTGGTTTTGTGGGCTCACCTGTTCTGGCTGATGATTTTGATGATGGTTTTGGAAGTGGAAAGAGGAAGGGTTCTGGCATTAAAATGTTTGGGGACTTGTGGAAAAGGAAGAGCCAGAAATAA 1089 45.0 MPRTRGSEMPQRQSPRGSLQLRTSSSDSDPLHHRPITDRSPKVGDRRSPRGAQSDSVNQKKLGTRIADLESQLGQALEELKNLKFQLASAEAAKKEAQEELEKKANMPITHDAMEIQEKHSPTEAYKSNKIDSSHPDEAPDDNQQETDVFEVPVEKVAVEAKPPAILEPEKVSFEELAMKNDEINLLKAKLEEKEKELEGSCQEIEGLKKQLNEAASEIVLVRTKEEEMALRLSQLGEDLKANKANEAQLKEKLEAVEGVKEALEAEMKKLRVQTEQWRKAADAAAAVLAGGVEMNGRRISERCGSMDKHFGGVFESSAGGYAGFVGSPVLADDFDDGFGSGKRKGSGIKMFGDLWKRKSQK* 363
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g00947 362 MobiDBLite consensus disorder prediction 27 49 - -
Vivi19g00947 362 MobiDBLite consensus disorder prediction 90 148 - -
Vivi19g00947 362 Coils Coil 174 225 - -
Vivi19g00947 362 MobiDBLite consensus disorder prediction 93 142 - -
Vivi19g00947 362 Coils Coil 233 281 - -
Vivi19g00947 362 MobiDBLite consensus disorder prediction 7 26 - -
Vivi19g00947 362 MobiDBLite consensus disorder prediction 1 63 - -
Vivi19g00947 362 PANTHER INTERACTOR OF CONSTITUTIVE ACTIVE ROPS 2, CHLOROPLASTIC-RELATED 144 362 IPR029688 -
Vivi19g00947 362 Coils Coil 59 107 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g00947 K28097 interactor of constitutive active ROPs
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr8:13470515 Vivi19g00947 Vivi-Chr19:17767658 dispersed
Vivi Vivi-Chr19:17767658 Vivi6g00323 Vivi-Chr6:4251511 transposed