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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g00961 ATGTTCCTTAAACCATTGCACTTGTCTCTGGAAACTTTATTAATACTTACTAATATATATGATTTGAATTGTCAAATACAAAACTTGTGTTCTGGGACCTGGGAGGTCAGCACTGCATTCTTGTACAACATAATAGTGCTTTGGTATTTTACTGTAGGCAGACTTCCCAAAAATCTTGAGTCCGGTCTTCATTCAATTTGGGAGAAATATTATGAAGAGGCACATGCTGTGGTATATGTAATTGACGCTTCTTGCCCATCATGTTTTGAAGATTCAAAATCAGCACTGGAAAAAATTCTCCGGCATGAGGATTTGCAAGGAGCTCCTCTTTTAATATTAGCAAACAAGCAGGTGAAATAA 360 36.67 MFLKPLHLSLETLLILTNIYDLNCQIQNLCSGTWEVSTAFLYNIIVLWYFTVGRLPKNLESGLHSIWEKYYEEAHAVVYVIDASCPSCFEDSKSALEKILRHEDLQGAPLLILANKQVK* 120
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g00961 119 Pfam ADP-ribosylation factor family 63 117 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Vivi19g00961 119 Gene3D - 55 119 IPR027417 -
Vivi19g00961 119 PANTHER ADP-RIBOSYLATION FACTOR-RELATED PROTEIN 1 61 117 IPR024156 GO:0003924(PANTHER)|GO:0005525(PANTHER)|GO:0005525(InterPro)|GO:0005794(PANTHER)|GO:0006886(PANTHER)|GO:0034067(PANTHER)|GO:0043001(PANTHER)
Vivi19g00961 119 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 117 IPR027417 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g00961 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr19:18550102 Vivi19g00963 Vivi-Chr19:18593103 proximal