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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g00963 ATGTATTCTTTACTGTTTGTAACTTTACTTGAGAAGTTGAAGGCCCTATACTCGAACTTGGAAGGCCTTCCTCCTGATCGAATTATTCCAACTGTGGGACTCAATATTGATCGTGTTGAATTGTCAAATACAAAACTTGTGTTCTGGGACCTGGGAGGTCAGTCCGGTCTTCATTCAATTTGGGAGAAATATTATGAAGAGGCACATGCTGTGGTATATGTAATTGACGCTTCTTGCCCATCATGTTTTGAAGATTCAAAATCAGCACTGGAAAAAATTCTCCGGCATGAGGATTTGCAAGGAGCTCCTCTTTTAATATTAGCAAACAAGCAGGTGAAATAA 342 39.47 MYSLLFVTLLEKLKALYSNLEGLPPDRIIPTVGLNIDRVELSNTKLVFWDLGGQSGLHSIWEKYYEEAHAVVYVIDASCPSCFEDSKSALEKILRHEDLQGAPLLILANKQVK* 114
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g00963 113 ProSiteProfiles small GTPase Arf family profile. 1 113 - -
Vivi19g00963 113 PANTHER ADP-RIBOSYLATION FACTOR-RELATED PROTEIN 1 8 111 IPR024156 GO:0003924(PANTHER)|GO:0005525(PANTHER)|GO:0005525(InterPro)|GO:0005794(PANTHER)|GO:0006886(PANTHER)|GO:0034067(PANTHER)|GO:0043001(PANTHER)
Vivi19g00963 113 Pfam ADP-ribosylation factor family 26 111 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Vivi19g00963 113 PRINTS GTP-binding SAR1 protein signature 57 82 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Vivi19g00963 113 PRINTS GTP-binding SAR1 protein signature 102 113 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Vivi19g00963 113 PRINTS GTP-binding SAR1 protein signature 30 54 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Vivi19g00963 113 Gene3D - 7 113 IPR027417 -
Vivi19g00963 113 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 111 IPR027417 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g00963 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr19:18550102 Vivi19g00963 Vivi-Chr19:18593103 proximal