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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g00966 ATGGGCGCTAAAAGGCAGCAAATGAGACTCCGCTGTGAGTTCGAAGTCAAAGTGAATGGCGCTCTCTCCTCCGACCCCGACCCCCGATTCCTCGACCGGCAAAAGGCGCTGGAAGCTGCAATGAATGATATCAATAGTTCATTTGGGAAAGGTAGTGTTACGAGATTGGGGAGTGCTGGTGGAGCTCTCGTTGAAACTTTTCCCAGTGGCTGTTTGACTTTGGACTTCGCCCTTGGTGGTGGCCTTCCCAAAGGGAGAATTGTGGAGATATATGGACCAGAAAGTAGTGGAAAGACTACCCTAGCACTCCATGCTATTGCAGAAGTGCAGAAGCTGGGAGGCAATGCCATGCTTGTTGATGCTGAGCATGCTTTTGATCCAGCATACTCCAAAGCATTGGGAGTCGATGTTGAAAATTTAATTGTCTGCCAACCTGATCATGGGGAGATGGCACTGGAGATTGCAGACCGTATGTGCAGATCTGGTGCTATAGATCTTATTTGTGTTGATTCTGTCTCAGCTCTCACACCACGTGCTGAGATTGAAGGTGAAATTGGGATGCAGCAAATGGGTTTGCAGGCACGTCTTATGAGCCAAGCTTTGCGTAAAATGTCAGGAAATGCTTCCAAAGCTGGATGTACTCTTATTTTCTTGAATCAAATAAGATATAAGATTGGTGTGTATTACGGCAATCCTGAAGTCACCAGTGGTGGTATTGCTTTAAAGTTCTTTGCTTCACTGCGCCTGGAGATACGTCCTATAGGAAAAATAAAGTCTAGTAAAGGTGATGAAGACATTGGGCTACGAGTTCGTGTGAGAGTGCAAAAGAGTAAGGTTTCCAGGCCATACAAGCAAGCTGAATTTGAAATAATATTTGGAGAGGGAGTGAGTAAACTGGGTTGCATTTTGGATTGTGCTGAACTGATGGATGTTGTGGTAAAGAAGGGCTCTTGGTATAGCTATGGGGACAATAGGTTGGGACAAGGAAGAGACAGAGCATTACAGTACTTGAGAGAGAACCCTCTTGTTTGCCATGAAATCGAAAAGATAGTTCGACCCATGATGGCTGAGGGAATTGGACAATTAGGCGCTCCACATGTGAGGCTCTCGCCGACATCGCCTGAAGATGAAGATATTCTTGAGGAGATCAGGTAA 1155 45.89 MGAKRQQMRLRCEFEVKVNGALSSDPDPRFLDRQKALEAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDFALGGGLPKGRIVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDHGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASLRLEIRPIGKIKSSKGDEDIGLRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCILDCAELMDVVVKKGSWYSYGDNRLGQGRDRALQYLRENPLVCHEIEKIVRPMMAEGIGQLGAPHVRLSPTSPEDEDILEEIR* 385
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g00966 384 PRINTS RecA protein signature 192 221 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Vivi19g00966 384 PRINTS RecA protein signature 120 149 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Vivi19g00966 384 PRINTS RecA protein signature 237 265 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Vivi19g00966 384 PRINTS RecA protein signature 272 301 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Vivi19g00966 384 PRINTS RecA protein signature 326 343 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Vivi19g00966 384 PRINTS RecA protein signature 154 183 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Vivi19g00966 384 Gene3D - 62 356 IPR027417 -
Vivi19g00966 384 SMART AAA-5 84 255 IPR003593 GO:0016887(InterPro)
Vivi19g00966 384 MobiDBLite consensus disorder prediction 365 384 - -
Vivi19g00966 384 CDD RecA 64 298 - -
Vivi19g00966 384 ProSiteProfiles RecA family profile 1. 63 221 IPR020588 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0140664(InterPro)
Vivi19g00966 384 NCBIfam recombinase RecA 32 352 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Vivi19g00966 384 Hamap Protein RecA [recA]. 33 358 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Vivi19g00966 384 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 296 IPR027417 -
Vivi19g00966 384 ProSitePatterns recA signature. 240 248 IPR020584 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006259(InterPro)|GO:0008094(InterPro)
Vivi19g00966 384 SUPERFAMILY RecA protein, C-terminal domain 297 354 IPR023400 -
Vivi19g00966 384 Pfam RecA C-terminal domain 300 353 IPR049261 -
Vivi19g00966 384 Pfam recA bacterial DNA recombination protein 35 297 IPR049428 -
Vivi19g00966 384 FunFam DNA repair protein recA 1 like 62 357 - -
Vivi19g00966 384 PANTHER RECA 12 358 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Vivi19g00966 384 ProSiteProfiles RecA family profile 2. 226 301 IPR020587 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006259(InterPro)|GO:0008094(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g00966 K03553 recombination protein RecA
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr11:1648260 Vivi19g00966 Vivi-Chr19:18712458 dispersed