AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi19g00973 ATGAAGAGTTGTGGTATTCCCCCCAAGTTGAGGTCGTATGGACCACCACTGTTTGGGTTTTGTAAGAAGGGGGATGCGAATAGAGCATATGAGGTCGATGCCCACATGGTGGAATCCGGTGTGGTTGCTGAAGAACCTGAGCTCTGTGCTCTGCTTGGGCTTAGTGTGGAGTCGCGGTGGGTGGACCAGGTGTATGAGATGATGCACCGCTTGCGAGCATCCGTGAGGCAGGTCTCAGAATCAACTGCTGAGGTTGTTGAACGATGGTTCAATTCCGAAGATGCTGCAGGAATGGATGAGGCGGGTGTGTGTCAGTCGTGTGGCGAGAAGCTTGTTGGCATTGATATTGATCCAAGGGAGACTGAGAACTTTGCTAGCTCTTTGACCAAGTTGGCTTGCCAAAGAGAAGTTAAGGCAGATTTTGTCCAGTTTCAGGAGTGGCTTCAGTGGCATGGTCCATTTGATGCAGTGGTAGATGGTGCCAATGTGAGCCTGATCAATCAAAAGAGCTTCAGCTTTTTCGAGCTTAACTCTGTTGTAAATTGCTTACGTCAAATAAGTCCATCAAAGCAATTACCACTTGTTATCTTGCATAGAAGTCGTGTAACTGGTGGTCCTGCTCAGAATCCCAATAACGAGAAGTTGATACAGAGTTGGAAAAAATCTGGTGCACTTTATGCTACGCCTGCTGGTTCAAATGATGATTGGTACTGGTTATATGCTGCTGTTAATGGTAACTGCTTGCTAGTGACAAATGATGAGATGCGAGATCATTTGTTCCAGCTGCTTGGAACTAGCTTTTTTCCTAGATGGAAGGAAAAGCATCAGGTTAGGCTGACGATGACTAGGCGTGGCCCTGTTCTCCATATGCCACCTCCATATTCAATTGTTATCCAGGAGTCAGAACAGGGTAGTTGGCATGTACCAACTGTCATAGGCGACGACCTTGAGACCCCGAGACAGTGGCTATGTGCCACCAGAACTAGGAAAAACCATCGGCATCCTCAGCATTTAGAGTGA 1020 47.35 MKSCGIPPKLRSYGPPLFGFCKKGDANRAYEVDAHMVESGVVAEEPELCALLGLSVESRWVDQVYEMMHRLRASVRQVSESTAEVVERWFNSEDAAGMDEAGVCQSCGEKLVGIDIDPRETENFASSLTKLACQREVKADFVQFQEWLQWHGPFDAVVDGANVSLINQKSFSFFELNSVVNCLRQISPSKQLPLVILHRSRVTGGPAQNPNNEKLIQSWKKSGALYATPAGSNDDWYWLYAAVNGNCLLVTNDEMRDHLFQLLGTSFFPRWKEKHQVRLTMTRRGPVLHMPPPYSIVIQESEQGSWHVPTVIGDDLETPRQWLCATRTRKNHRHPQHLE* 340
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi19g00973 339 Pfam Protein-only RNase P 98 324 IPR031595 -
Vivi19g00973 339 Gene3D Tetratricopeptide repeat domain 1 96 IPR011990 GO:0005515(InterPro)
Vivi19g00973 339 Gene3D Tetratricopeptide repeat domain 97 327 IPR011990 GO:0005515(InterPro)
Vivi19g00973 339 FunFam Proteinaceous RNase P 2 116 290 - -
Vivi19g00973 339 PANTHER UNCHARACTERIZED 1 328 - GO:0001682(PANTHER)|GO:0004526(PANTHER)
Vivi19g00973 339 Gene3D - 116 290 - -
Vivi19g00973 339 Pfam Pentacotripeptide-repeat region of PRORP 1 96 IPR033443 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi19g00973 K18213 proteinaceous RNase P [EC:3.1.26.5]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr12:13796494 Vivi19g00973 Vivi-Chr19:18990270 dispersed
Vivi Vivi-Chr12:22085554 Vivi19g00973 Vivi-Chr19:18990270 dispersed