Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi19g00973 | ATGAAGAGTTGTGGTATTCCCCCCAAGTTGAGGTCGTATGGACCACCACTGTTTGGGTTTTGTAAGAAGGGGGATGCGAATAGAGCATATGAGGTCGATGCCCACATGGTGGAATCCGGTGTGGTTGCTGAAGAACCTGAGCTCTGTGCTCTGCTTGGGCTTAGTGTGGAGTCGCGGTGGGTGGACCAGGTGTATGAGATGATGCACCGCTTGCGAGCATCCGTGAGGCAGGTCTCAGAATCAACTGCTGAGGTTGTTGAACGATGGTTCAATTCCGAAGATGCTGCAGGAATGGATGAGGCGGGTGTGTGTCAGTCGTGTGGCGAGAAGCTTGTTGGCATTGATATTGATCCAAGGGAGACTGAGAACTTTGCTAGCTCTTTGACCAAGTTGGCTTGCCAAAGAGAAGTTAAGGCAGATTTTGTCCAGTTTCAGGAGTGGCTTCAGTGGCATGGTCCATTTGATGCAGTGGTAGATGGTGCCAATGTGAGCCTGATCAATCAAAAGAGCTTCAGCTTTTTCGAGCTTAACTCTGTTGTAAATTGCTTACGTCAAATAAGTCCATCAAAGCAATTACCACTTGTTATCTTGCATAGAAGTCGTGTAACTGGTGGTCCTGCTCAGAATCCCAATAACGAGAAGTTGATACAGAGTTGGAAAAAATCTGGTGCACTTTATGCTACGCCTGCTGGTTCAAATGATGATTGGTACTGGTTATATGCTGCTGTTAATGGTAACTGCTTGCTAGTGACAAATGATGAGATGCGAGATCATTTGTTCCAGCTGCTTGGAACTAGCTTTTTTCCTAGATGGAAGGAAAAGCATCAGGTTAGGCTGACGATGACTAGGCGTGGCCCTGTTCTCCATATGCCACCTCCATATTCAATTGTTATCCAGGAGTCAGAACAGGGTAGTTGGCATGTACCAACTGTCATAGGCGACGACCTTGAGACCCCGAGACAGTGGCTATGTGCCACCAGAACTAGGAAAAACCATCGGCATCCTCAGCATTTAGAGTGA | 1020 | 47.35 | MKSCGIPPKLRSYGPPLFGFCKKGDANRAYEVDAHMVESGVVAEEPELCALLGLSVESRWVDQVYEMMHRLRASVRQVSESTAEVVERWFNSEDAAGMDEAGVCQSCGEKLVGIDIDPRETENFASSLTKLACQREVKADFVQFQEWLQWHGPFDAVVDGANVSLINQKSFSFFELNSVVNCLRQISPSKQLPLVILHRSRVTGGPAQNPNNEKLIQSWKKSGALYATPAGSNDDWYWLYAAVNGNCLLVTNDEMRDHLFQLLGTSFFPRWKEKHQVRLTMTRRGPVLHMPPPYSIVIQESEQGSWHVPTVIGDDLETPRQWLCATRTRKNHRHPQHLE* | 340 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi19g00973 | 339 | Pfam | Protein-only RNase P | 98 | 324 | IPR031595 | - | |
| Vivi19g00973 | 339 | Gene3D | Tetratricopeptide repeat domain | 1 | 96 | IPR011990 | GO:0005515(InterPro) | |
| Vivi19g00973 | 339 | Gene3D | Tetratricopeptide repeat domain | 97 | 327 | IPR011990 | GO:0005515(InterPro) | |
| Vivi19g00973 | 339 | FunFam | Proteinaceous RNase P 2 | 116 | 290 | - | - | |
| Vivi19g00973 | 339 | PANTHER | UNCHARACTERIZED | 1 | 328 | - | GO:0001682(PANTHER)|GO:0004526(PANTHER) | |
| Vivi19g00973 | 339 | Gene3D | - | 116 | 290 | - | - | |
| Vivi19g00973 | 339 | Pfam | Pentacotripeptide-repeat region of PRORP | 1 | 96 | IPR033443 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi19g00973 | K18213 | proteinaceous RNase P [EC:3.1.26.5] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Vivi | Vivi-Chr12:13796494 | Vivi19g00973 | Vivi-Chr19:18990270 | dispersed | |
| Vivi | Vivi-Chr12:22085554 | Vivi19g00973 | Vivi-Chr19:18990270 | dispersed |